Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcgattcatacggctatttgctgggatttgaaaagcaccctataaagaattgccttatttgttgtttataacatgatgttcattgcgcagATTAGGTGACTTTTGGATGCTCGATACTG

Basic information

species Oryza sativa
transcript LOC_Os03g61950.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117250064|gb|CT843884.1|CT843884
EST:     GTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAG                         ATTAGGTGACTTTTGGATGCTCGATACTG
genomic: GTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAGgtctgcgatt ... cattgcgcagATTAGGTGACTTTTGGATGCTCGATACTG
EST: gi|29686595|gb|CB682870.1|CB682870
EST:     GTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAG                         ATTAGGTGACTTTTGGATGCTCGATACTG
genomic: GTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAGgtctgcgatt ... cattgcgcagATTAGGTGACTTTTGGATGCTCGATACTG
EST: gi|88361530|gb|CI605311.1|CI605311
EST:     GTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAG                         ATTAGGTGACTTTTGGATGCTCGATACTG
genomic: GTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAGgtctgcgatt ... cattgcgcagATTAGGTGACTTTTGGATGCTCGATACTG
EST: gi|40486394|gb|BX897943.1|BX897943
EST:     GTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAG                         ATTAGGTGACTTTTGGATGCTCGATACTG
genomic: GTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAGgtctgcgatt ... cattgcgcagATTAGGTGACTTTTGGATGCTCGATACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccctataaagaattgccttatttgttgtttataacatgatgttcattgcgcagATTAGGTGACTTTTGGATGCTCGATACTG
                              ttataac  putative branch site (score: 2)
                   ttatttgttgtttata  TA-rich tract