1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attctttgccagccaatttgggccgataatgcatttaacattagtttctttccattgtttggttatcttttcacataataaatgtttttctgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA
species | Oryza sativa |
transcript | LOC_Os03g61810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAEST: gi|88375374|gb|CI681142.1|CI681142
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCA
EST: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCAAAAAGCTTGGEST: gi|88338152|gb|CI677144.1|CI677144
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTGG
EST: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAEST: gi|27547275|gb|CA765405.2|CA765405
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCA
EST: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCAAAAAGCTTGGAAAAATTGAGA-GNTCAGACTGTGAAATGTATGCEST: gi|66916794|gb|CX103642.1|CX103642
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTG-TCAGACTGTGAAATGTATGC
EST: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAEST: gi|89167816|gb|CI021515.1|CI021515
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCA
EST: TGGATTATACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAEST: gi|58688225|gb|CK076912.1|CK076912
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCA
EST: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCGAAAAGCTTGGAAAAATTGAGTTGTCCGACTGTGAAATGTATGCAEST: gi|25806978|gb|CA762939.1|CA762939
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCA
EST: TGGATTACGCTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAEST: gi|88588249|gb|CI706054.1|CI706054
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCA
EST: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAG GCTTGCAAAAAGCTTG
genomic: TGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGgtaacttgcc ... tgtgctatagGCTTGCAAAAAGCTTG
ttctttccattgtttggttatcttttcacataataaatgtttttctgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA
tgtttttct CT-rich tract
ttatcttttcacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctttgccagccaatttgggccgataatgcatttaacattagtttctttccattgtttggttatcttttcacataataaatgtttttctgtgctatagGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA
- - - tgccagc
- - - - - - - - - tgggccg
- - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacataa