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gtaagttaattcttataatattgtataatgttgcataaatagcgaaatttgttcactttttcatacacttcattggccacaagaaaaagaaaacgaacatatcctgtctgttcaattctctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAG
species | Oryza sativa |
transcript | LOC_Os03g61710.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGG ATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGEST: gi|29681133|gb|CB677408.1|CB677408
genomic: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGGgtaagttaat ... ctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGG
EST: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGG ATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGEST: gi|58611982|gb|CK039694.1|CK039694
genomic: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGGgtaagttaat ... ctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGG
EST: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGG ATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGEST: gi|58695416|gb|CK084103.1|CK084103
genomic: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGGgtaagttaat ... ctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGG
EST: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGG ATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGEST: gi|40493179|gb|BX900637.1|BX900637
genomic: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGGgtaagttaat ... ctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGG
EST: GGAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGG ATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGG
genomic: GAAATTGACATAAAAAACCACAAATGGGGCCACTATTTCATGTGTGGgtaagttaat ... ctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGG
ggccacaagaaaaagaaaacgaacatatcctgtctgttcaattctctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAG
ttctctatct CT-rich tract
aaaaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaattcttataatattgtataatgttgcataaatagcgaaatttgttcactttttcatacacttcattggccacaagaaaaagaaaacgaacatatcctgtctgttcaattctctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA