1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgatggtttaatttgatcacttcgcattcccctctgtgtgctcatttcagagcgcaacatctttgattgatcagtttcttttgaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGCTATCCTTACAAAGAACGGCAAGAACCATCTAATCAAGAAGGACGTGCCA
species | Oryza sativa |
transcript | LOC_Os03g61670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAG CATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGCEST: gi|58663372|gb|CK052058.1|CK052058
genomic: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAGgtgatggttt ... gaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGC
EST: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAG CATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGCEST: gi|58670368|gb|CK059054.1|CK059054
genomic: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAGgtgatggttt ... gaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGC
EST: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAG CATCATGTTTGGACCAGATATCTGCGGGTEST: gi|58661947|gb|CK050627.1|CK050627
genomic: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAGgtgatggttt ... gaaattgcagCATCATGTTTGGACCAGATATCTGCGGGT
EST: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAG CATCATGTTTGGACCAGATATCTGCGGGTATGEST: gi|58674022|gb|CK062708.1|CK062708
genomic: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAGgtgatggttt ... gaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATG
EST: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAG CATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGCEST: gi|58658658|gb|CK047338.1|CK047338
genomic: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAGgtgatggttt ... gaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGC
EST: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAG CATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGCEST: gi|58672993|gb|CK061679.1|CK061679
genomic: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAGgtgatggttt ... gaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGC
EST: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAG CATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGC
genomic: CTCGGTGGCGACGTTGACCAGAAGAAGTTTGGTGGCGAGACGCCGTACAGgtgatggttt ... gaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGC
gtgctcatttcagagcgcaacatctttgattgatcagtttcttttgaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGCTATCCTTACAAAGAACGGCAAGAACCATCTAATCAAGAAGGACGTGCCA
gattgat putative branch site (score: 39)
tttcttttg putative PPT
tttcttttgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatggtttaatttgatcacttcgcattcccctctgtgtgctcatttcagagcgcaacatctttgattgatcagtttcttttgaaattgcagCATCATGTTTGGACCAGATATCTGCGGGTATGCCACCAAGAAGGTTCACGCTATCCTTACAAAGAACGGCAAGAACCATCTAATCAAGAAGGACGTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG