1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agcttagatgacaactcatgaaacttgggcagtcatgctgcttgcaaatctacccaagaaactttagccttttgttgcagcatctcatatattgttgcagGAATTATATGCAAAGTTAAACAGGATGGCGAGCATTGCTGCAGATTTGTTTGTTGGTAGGGAAAGGTTTGCTACATTCCTACTGATGCGGCTTACAGAAA
species | Oryza sativa |
transcript | LOC_Os03g58970.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATAATACTGTTGAAGAGCCAGAATGGGTTCCATCTCTAATTTTTCAG GAATTATATGCAAAGTTAAACAGGATGGCGAGCATTGCTGCAGATTTGTTTEST: gi|29686700|gb|CB682975.1|CB682975
genomic: TGGATAATACTGTTGAAGAGCCAGAATGGGTTCCATCTCTAATTTTTCAGgtccgtataa ... attgttgcagGAATTATATGCAAAGTTAAACAGGATGGCGAGCATTGCTGCAGATTTGTTT
EST: TGGATAATACTGTTGAAGAGCCAGAATGGGTTCCATCTCTAATTTTTCAG GAATTATATGCAAAGTTAAACAGGATGGCGAGCATTGCTGCAGATTTGTTT
genomic: TGGATAATACTGTTGAAGAGCCAGAATGGGTTCCATCTCTAATTTTTCAGgtccgtataa ... attgttgcagGAATTATATGCAAAGTTAAACAGGATGGCGAGCATTGCTGCAGATTTGTTT
aaatctacccaagaaactttagccttttgttgcagcatctcatatattgttgcagGAATTATATGCAAAGTTAAACAGGATGGCGAGCATTGCTGCAGATTTGTTTGTTGGTAGGGAAAGGTTTGCTACATTCCTACTGATGCGGCTTACAGAAA
atatattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttagatgacaactcatgaaacttgggcagtcatgctgcttgcaaatctacccaagaaactttagccttttgttgcagcatctcatatattgttgcagGAATTATATGCAAAGTTAAACAGGATGGCGAGCATTGCTGCAGATTTGTTTGTTGGTAGGGAAAGGTTTGCTACATTCCTACTGATGCGGCTTACAGAAA
- - - - - - - - catgaaa
- - - - - - - - - - - - - - - -gtcatgc
- - - - - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcatc