1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgtttgacttattttggactactatccttttttcttccacacagctattcgatcctttgatttctgaagctgagttcatgtttttaatgattccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACTTCATAGCCTTCTTTAGTGATATTGATATCCCAGGAAGTCCTGCAGCAC
species | Oryza sativa |
transcript | LOC_Os03g58960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTG TTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACEST: gi|27577344|gb|CB000039.1|CB000039
genomic: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTGgtatgatatt ... ttccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCAC
EST: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTG TTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACEST: gi|58685848|gb|CK074535.1|CK074535
genomic: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTGgtatgatatt ... ttccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCAC
EST: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTG TTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACEST: gi|29659673|gb|CB655948.1|CB655948
genomic: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTGgtatgatatt ... ttccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCAC
EST: TGTTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTG TTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACEST: gi|218500781|gb|FG951176.1|FG951176
genomic: TG-TTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTGgtatgatatt ... ttccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCAC
EST: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTG TTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACEST: gi|27554328|gb|CA998228.1|CA998228
genomic: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTGgtatgatatt ... ttccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCAC
EST: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTG TTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACEST: gi|29675562|gb|CB671837.1|CB671837
genomic: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTGgtatgatatt ... ttccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCAC
EST: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTG TTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCAC
genomic: TTGTTAATTGTGTTGGGGCACTAAACTACAAATACTTTCTTCTCTTCCTGgtatgatatt ... ttccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCAC
tattcgatcctttgatttctgaagctgagttcatgtttttaatgattccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACTTCATAGCCTTCTTTAGTGATATTGATATCCCAGGAAGTCCTGCAGCAC
ttttaat putative branch site (score: 21)
atgtttttaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtttgacttattttggactactatccttttttcttccacacagctattcgatcctttgatttctgaagctgagttcatgtttttaatgattccatgcagTTTTACACCTTCCTTGAGACAACACTGGTTACCCTTTCTCTATTGCCTCACTTCATAGCCTTCTTTAGTGATATTGATATCCCAGGAAGTCCTGCAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - -cttccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatg