1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagcagaaatatgcagctttgcatacgtaacattgttagtctaaatcttctgatgtttacatttatacaagttatgtgcttctcaattgattgtaattatcataattcttcctaatgaagGACCCTGTTGTTAGCGGTATTGAGGAGAGAATTGCAGCTTGGACCCTGCTTCCGCAAG
species | Oryza sativa |
transcript | LOC_Os03g58880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTATGAGCGAAGTGCGCACCAGCTCTGGCATGTTCTTGGACAAACAACAG GACCCTGTTGTTAGCGGTATTGAGGAGAGAATTGCAGCTTGGACCCTGCTTEST: gi|5002983|gb|AU068092.1|AU068092
genomic: TTATGAGCGAAGTGCGCACCAGCTCTGGCATGTTCTTGGACAAACAACAGgtagcagaaa ... cctaatgaagGACCCTGTTGTTAGCGGTATTGAGGAGAGAATTGCAGCTTGGACCCTGCTT
EST: TTATGAGCGAAGTGCGCACCAGCTCTGGCATGTTCTTGGACAAACAACAG GACCCTGTTGTTEST: gi|88574583|gb|CI666352.1|CI666352
genomic: TTATGAGCGAAGTGCGCACCAGCTCTGGCATGTTCTTGGACAAACAACAGgtagcagaaa ... cctaatgaagGACCCTGTTGTT
EST: TTATGAGCGAAGTGCGCACCAGCTCTGGCATGTTCTTGGACAAACAACAG GACCCTGTTGTTAGEST: gi|88575895|gb|CI670040.1|CI670040
genomic: TTATGAGCGAAGTGCGCACCAGCTCTGGCATGTTCTTGGACAAACAACAGgtagcagaaa ... cctaatgaagGACCCTGTTGTTAG
EST: TTATGAGCGAAGTGCGCACCAGCTCTGGCATGTTCTTGGACAAACAACAG GACCCTGTTGTTAGCGGTATTGAGGAGAGAATT
genomic: TTATGAGCGAAGTGCGCACCAGCTCTGGCATGTTCTTGGACAAACAACAGgtagcagaaa ... cctaatgaagGACCCTGTTGTTAGCGGTATTGAGGAGAGAATT
tacaagttatgtgcttctcaattgattgtaattatcataattcttcctaatgaagGACCCTGTTGTTAGCGGTATTGAGGAGAGAATTGCAGCTTGGACCCTGCTTCCGCAAG
tcctaat putative branch site (score: 3)
ttcttcct CT-rich tract
aattgattgtaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcagaaatatgcagctttgcatacgtaacattgttagtctaaatcttctgatgtttacatttatacaagttatgtgcttctcaattgattgtaattatcataattcttcctaatgaagGACCCTGTTGTTAGCGGTATTGAGGAGAGAATTGCAGCTTGGACCCTGCTTCCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT