1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aactgaggaactatatccaatatacacctgagaaacctcttgagtttacacttagcaatttcatagtatcttgttgaagttctaaaatattttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAGCATTTTTACTGTAAAAGCTGTATTGCTGAAAATGGAAAGGATCTACAA
species | Oryza sativa |
transcript | LOC_Os03g58530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATACAATCCTGATAACCTTATGATCCAATGTGAGGATTGCTCTGACTG GTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAEST: gi|88987559|gb|CI034472.1|CI034472
genomic: CCATACAATCCTGATAACCTTATGATCCAATGTGAGGATTGCTCTGACTGgtgagataca ... tttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGA
EST: ATGTGAGGATTGCTCTGACTG GTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAEST: gi|88839650|gb|CI015741.1|CI015741
genomic: ATGTGAGGATTGCTCTGACTGgtgagataca ... tttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGA
EST: CCATACAATCCTGATAACCTTATGATCCAATGTGAGGATTGCTCTGACTG GTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAEST: gi|86536262|gb|CI176468.1|CI176468
genomic: CCATACAATCCTGATAACCTTATGATCCAATGTGAGGATTGCTCTGACTGgtgagataca ... tttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGA
EST: TTATGATCCAATGTGAGGATTGCTCTGACTG GTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAEST: gi|44673976|gb|CR287410.1|CR287410
genomic: TTATGATCCAATGTGAGGATTGCTCTGACTGgtgagataca ... tttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGA
EST: GATCCAATGTGAGGATTGTTCTGACTG GTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAEST: gi|88204685|gb|CI204534.1|CI204534
genomic: GATCCAATGTGAGGATTGCTCTGACTGgtgagataca ... tttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGA
EST: CCTTATGATCCAATGTGAGGATTGCTCTGACTG GTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGA
genomic: CCTTATGATCCAATGTGAGGATTGCTCTGACTGgtgagataca ... tttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGA
ttacacttagcaatttcatagtatcttgttgaagttctaaaatattttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAGCATTTTTACTGTAAAAGCTGTATTGCTGAAAATGGAAAGGATCTACAA
ttctaaa putative branch site (score: 7)
tattttcct CT-rich tract
aagttctaaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgaggaactatatccaatatacacctgagaaacctcttgagtttacacttagcaatttcatagtatcttgttgaagttctaaaatattttcctgcagGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAGCATTTTTACTGTAAAAGCTGTATTGCTGAAAATGGAAAGGATCTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - cacctga