1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtctcataacttgataatttgaccacttcattatctttgcaagctactacattattcccaagagattgaattattgaagatatacacaactaattgtttttgttatccgttcagtttatgcagATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG
species | Oryza sativa |
transcript | LOC_Os03g57790.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|11025772|gb|AU162373.1|AU162373
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|88220568|gb|CI220128.1|CI220128
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|88220568|gb|CI220128.1|CI220128
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|58688873|gb|CK077560.1|CK077560
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|58688873|gb|CK077560.1|CK077560
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38469192|gb|CF953323.1|CF953323
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: GAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38469192|gb|CF953323.1|CF953323
genomic: -AACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: GAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|4716198|gb|AU057314.1|AU057314
genomic: -AACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|4716198|gb|AU057314.1|AU057314
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|4716198|gb|AU057314.1|AU057314
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|4716198|gb|AU057314.1|AU057314
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|38468844|gb|CF952975.1|CF952975
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTGCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38468844|gb|CF952975.1|CF952975
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTGCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|218505167|gb|FG956727.1|FG956727
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|218505167|gb|FG956727.1|FG956727
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38469613|gb|CF953744.1|CF953744
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGEST: gi|58590675|gb|CF988983.1|CF988983
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcagATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATG
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTGTCACCCAAATATTTATGCAEST: gi|58590675|gb|CF988983.1|CF988983
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTGTCACCCAAATATTTATGCAEST: gi|42592241|gb|CK738727.1|CK738727
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|42592241|gb|CK738727.1|CK738727
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|86489541|gb|CI132174.1|CI132174
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACGAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|86489541|gb|CI132174.1|CI132174
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACGAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|218485740|gb|FG958740.1|FG958740
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|218485740|gb|FG958740.1|FG958740
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|27576883|gb|CA999577.1|CA999577
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|27576883|gb|CA999577.1|CA999577
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38468296|gb|CF952427.1|CF952427
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38468296|gb|CF952427.1|CF952427
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38474625|gb|CF958758.1|CF958758
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|38474625|gb|CF958758.1|CF958758
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|38474625|gb|CF958758.1|CF958758
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|38474625|gb|CF958758.1|CF958758
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|86419732|gb|CI054533.1|CI054533
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|86419732|gb|CI054533.1|CI054533
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38480664|gb|CF964753.1|CF964753
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|38480664|gb|CF964753.1|CF964753
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|87030448|gb|CI252725.1|CI252725
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGEST: gi|58677295|gb|CK065982.1|CK065982
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcagATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATG
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|58677295|gb|CK065982.1|CK065982
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|29666285|gb|CB662560.1|CB662560
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|29666285|gb|CB662560.1|CB662560
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATATTTATGCAEST: gi|33797775|gb|CF324747.1|CF324747
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCC--A-A---AT--Agtatgtctca ... gtt
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|33797775|gb|CF324747.1|CF324747
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|33797775|gb|CF324747.1|CF324747
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|33797775|gb|CF324747.1|CF324747
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|218500669|gb|FG957555.1|FG957555
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|218500669|gb|FG957555.1|FG957555
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|218500669|gb|FG957555.1|FG957555
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA TEST: gi|218500669|gb|FG957555.1|FG957555
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
EST: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA T
genomic: CAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctca ... gtttatgcag-
aattattgaagatatacacaactaattgtttttgttatccgttcagtttatgcagATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG
aactaat putative branch site (score: 2)
taattgtttttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctcataacttgataatttgaccacttcattatctttgcaagctactacattattcccaagagattgaattattgaagatatacacaactaattgtttttgttatccgttcagtttatgcagATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC