1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatccttatatttgaggatggaggtagtatcagcttaggatccctaaactgatttaatacaacatgttgctttctaaacttcattgtatttttattgcagTGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATG
species | Oryza sativa |
transcript | LOC_Os03g57130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATCTCCAGGGGCTTCAAACCGTGTCTGCAATGCACTTGCACTTCTTCAG TGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATGEST: gi|58688549|gb|CK077236.1|CK077236
genomic: TATCTCCAGGGGCTTCAAACCGTGTCTGCAATGCACTTGCACTTCTTCAGgtacaccttt ... tttattgcagTGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATG
EST: TATCTCCAGGGGCTTCAAACCGTGTCTGCAATGCACTTGCACTTCTTCAG TGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATGEST: gi|33800042|gb|CF325887.1|CF325887
genomic: TATCTCCAGGGGCTTCAAACCGTGTCTGCAATGCACTTGCACTTCTTCAGgtacaccttt ... tttattgcagTGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATG
EST: TATCTCCAGGGGCTTCAAACCGTGTCTGCAATGCACTTGCACTTCTTCAG TGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATG
genomic: TATCTCCAGGGGCTTCAAACCGTGTCTGCAATGCACTTGCACTTCTTCAGgtacaccttt ... tttattgcagTGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATG
aaactgatttaatacaacatgttgctttctaaacttcattgtatttttattgcagTGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATG
ttctaaa putative branch site (score: 31)
tttttatt putative PPT
taaacttcattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatccttatatttgaggatggaggtagtatcagcttaggatccctaaactgatttaatacaacatgttgctttctaaacttcattgtatttttattgcagTGTGTTGCCTCACACAGTGACACAAGGATTCCTTTCTTGAATG
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