1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattggttacaatttacagcacagttatgtttgtttaggttgtgtgtttgctgttccataatcagcattttttattattttgttgcagCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGTTGCAACTGGAGCTGGATTTGGTTT
species | Oryza sativa |
transcript | LOC_Os03g54920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTG CAAAACCAGCATATTATGACTATGTCTGTGCGATGTTACTACTGAATGGCAEST: gi|86542850|gb|CI183056.1|CI183056
genomic: TGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGgtaattggtt ... tttgttgcagCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCA
EST: TGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTG CAAAACCAGCATATTATGACTATGTCTGTGCGATGTTACTACTGAATGGCAEST: gi|86892806|gb|CI312118.1|CI312118
genomic: TGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGgtaattggtt ... tttgttgcagCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCA
EST: GCCTGAATTGTGGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTG CAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCAEST: gi|88962251|gb|CI097404.1|CI097404
genomic: GCCTG-ATTGT-GTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGgtaattggtt ... tttgttgcagCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCA
EST: TGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTG CAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCAEST: gi|86863609|gb|CI345283.1|CI345283
genomic: TGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGgtaattggtt ... tttgttgcagCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCA
EST: TGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTG CAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCA
genomic: TGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGgtaattggtt ... tttgttgcagCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCA
tttaggttgtgtgtttgctgttccataatcagcattttttattattttgttgcagCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGTTGCAACTGGAGCTGGATTTGGTTT
ttttttattatttt CT-rich tract
ataatcagcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattggttacaatttacagcacagttatgtttgtttaggttgtgtgtttgctgttccataatcagcattttttattattttgttgcagCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGTTGCAACTGGAGCTGGATTTGGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA