1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgttagttctaactttgtcatctggctaagttatctaatttgtgctatgcctgttgatttgatggtcatttctcactgatttcattgttcaattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAG
species | Oryza sativa |
transcript | LOC_Os03g54890.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGG GAGCTTGAGGAGAAGAGGAAGGAGAAGEST: gi|58664019|gb|CK052705.1|CK052705
genomic: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGgtaagtttcc ... caattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAG
EST: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGG GAGCTTGAGGAGAAGAGGAAGGAGAAGEST: gi|86888621|gb|CI305689.1|CI305689
genomic: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGgtaagtttcc ... caattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAG
EST: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGG GAGCTTGAGGAGAAGAGGAAGGAGAAGEST: gi|58695434|gb|CK084121.1|CK084121
genomic: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGgtaagtttcc ... caattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAG
EST: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGG GAGCTTGAGGAGAAGAGGAAGGAGAAGEST: gi|218498099|gb|FG967283.1|FG967283
genomic: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGgtaagtttcc ... caattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAG
EST: TCGGCCAGCTCTCCAAAGAGGTTGGCTGGAACTACTATGACACCATCAGG GAGCTTGAGGAGAAGAGGAAGGEST: gi|58677624|gb|CK066311.1|CK066311
genomic: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGgtaagtttcc ... caattttcagGAGCTTGAGGAGAAGAGGAAGG
EST: TCGGGCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGG GAGCTTGAGGAGAAGAGGAEST: gi|58595748|gb|CK006276.1|CK006276
genomic: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGgtaagtttcc ... caattttcagGAGCTTGAGGAGAAGAGGA
EST: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGG GAGCTTGAGGAGAAGAGGA
genomic: TCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGgtaagtttcc ... caattttcagGAGCTTGAGGAGAAGAGGA
ctatgcctgttgatttgatggtcatttctcactgatttcattgttcaattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAG
ttttc CT-rich tract
ttcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttagttctaactttgtcatctggctaagttatctaatttgtgctatgcctgttgatttgatggtcatttctcactgatttcattgttcaattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - -catctgg
- - - - - - - - - - - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt