1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtttcgaaaataatgtaatggaaaaggaagtgtttccagtaattgctatttgacttgaacctgttctgagaatttaccctttgttgcatattgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACTCCACGGTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACT
species | Oryza sativa |
transcript | LOC_Os03g53250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACEST: gi|86904866|gb|CI310659.1|CI310659
genomic: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtaaacacac ... attgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATAC
EST: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACEST: gi|58659295|gb|CK047975.1|CK047975
genomic: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtaaacacac ... attgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATAC
EST: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACEST: gi|33797190|gb|CF324459.1|CF324459
genomic: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtaaacacac ... attgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATAC
EST: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACEST: gi|29661322|gb|CB657597.1|CB657597
genomic: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtaaacacac ... attgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATAC
EST: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACEST: gi|58670758|gb|CK059444.1|CK059444
genomic: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtaaacacac ... attgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATAC
EST: GCTACCCAACCAATATAAAGTGAAGAGACAGATCCAGAGTACTTTTGCAG GTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACEST: gi|58653163|gb|CK041843.1|CK041843
genomic: GCTACCCAACCAATATAAAG-GAAGAGACAGATCCAGAGTACTTTTGCAGgtaaacacac ... attgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATAC
EST: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACEST: gi|29633400|gb|CB638409.1|CB638409
genomic: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtaaacacac ... attgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATAC
EST: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAAGGTTATAC
genomic: TGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtaaacacac ... attgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATAC
gctatttgacttgaacctgttctgagaatttaccctttgttgcatattgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACTCCACGGTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACT
atttgac putative branch site (score: 12)
ttgtttt putative PPT
atattgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttcgaaaataatgtaatggaaaaggaagtgtttccagtaattgctatttgacttgaacctgttctgagaatttaccctttgttgcatattgttttagGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACTCCACGGTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -aaaataa
- - - - - - - tgtaatg
- - - - - - - - - - - aaaaggaa
- - - - - - - - - - - - - - - - - - - - - - tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcat