1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ataaaacccttggtattatatcatgtctctgagaggacatttatggtaatattatttaataggattttatgctgtcagttgttccttaagaaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG
species | Oryza sativa |
transcript | LOC_Os03g50620.2 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGA GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTAEST: gi|58659859|gb|CK048539.1|CK048539
genomic: ATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGAgtatcctgtt ... aaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTA
EST: ATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGA GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTAEST: gi|426369|gb|D22232.1|D22232
genomic: ATGGAGGAACTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGAgtatcctgtt ... aaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTA
EST: CTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGA GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTA
genomic: CTTGGGATGGGACCAAATGGCGGGCTTATCTATTGCATGGAgtatcctgtt ... aaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTA
gtaatattatttaataggattttatgctgtcagttgttccttaagaaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG
ttccttaag putative branch site
attatttaataggatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaaacccttggtattatatcatgtctctgagaggacatttatggtaatattatttaataggattttatgctgtcagttgttccttaagaaaaccatagGCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG