1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaggttcttaggttatctagatgagagaagctttggcgaccataaacgaatttcctggaggctcttataccccttctctctgtttgttcttccgcagTTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGGCCTTTGAAGTGATTATTCTTGCTGACAATTTCAG
species | Oryza sativa |
transcript | LOC_Os03g49900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTATTGCGTTTGAGCTGCTGCTTTGCATATATCTCGAAAGTTTGAGAG TTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGGEST: gi|29643978|gb|CB648985.1|CB648985
genomic: GCTTATTGCGTTTGAGCTGCTGCTTTGCATATATCTCGAAAGTTTGAGAGgtaggttctt ... tcttccgcagTTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGG
EST: GCTTATTGCGTTTGAGCTGCTGCTTTGCATATATCTCGAAAGTTTGAGAG TTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGGEST: gi|29638900|gb|CB643909.1|CB643909
genomic: GCTTATTGCGTTTGAGCTGCTGCTTTGCATATATCTCGAAAGTTTGAGAGgtaggttctt ... tcttccgcagTTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGG
EST: GCTTATTGCGTTTGAGCTGCTGCTTTGCATATATCTCGAAAGTTTGAGAG TTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGGEST: gi|29658594|gb|CB654869.1|CB654869
genomic: GCTTATTGCGTTTGAGCTGCTGCTTTGCATATATCTCGAAAGTTTGAGAGgtaggttctt ... tcttccgcagTTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGG
EST: GCTTATTGCGTTTGAGCTGCTGCTTTGCATATATCTCGAAAGTTTGAGAG TTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGG
genomic: GCTTATTGCGTTTGAGCTGCTGCTTTGCATATATCTCGAAAGTTTGAGAGgtaggttctt ... tcttccgcagTTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGG
taaacgaatttcctggaggctcttataccccttctctctgtttgttcttccgcagTTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGGCCTTTGAAGTGATTATTCTTGCTGACAATTTCAG
ctcttataccccttct CT-rich tract
tcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttcttaggttatctagatgagagaagctttggcgaccataaacgaatttcctggaggctcttataccccttctctctgtttgttcttccgcagTTAAAAGTAAGCCGACTGTTGATTTGAAGATTGTATTCCTTCCTCTTCTGGCCTTTGAAGTGATTATTCTTGCTGACAATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG