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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattgagtctgactcagattgtagcatgttgccctgataccctgcatcattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG

Basic information

species Oryza sativa
transcript LOC_Os03g49600.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49600.3 (Oryza sativa), 3'ss of exon 3
lower sequence: AC217401.3_FGT001 (Zea mays), 3'ss of exon 3
gtacattgagtctgactcagattgtagc--atg-ttgccctgataccct----gcatcattttttttaatgacaatt--tgttactgccaaatatgcgcctttggtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG
||||||  |  |||| | |  |||||    ||  ||  | ||  |  ||    |||  | || |||||     || |     | | |  | | ||||  ||||||| |   ||||||| |||||| |||| || | |||||| || || |||||||||||||| ||||||||||| || | |||||
gtacat-aaacctgagttaagttgtacacaatacttaacatggcagtctaggagcacaagttcttttaggtttaagtaccagtgcggtgacacatgcaactttggtttctgtagATGGCGAGGGAAGAGTCAATCCAGAAGGTGTTGCCTATTACAACAATCTGATAAACTACCTGCTTCGGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58675601|gb|CK064288.1|CK064288
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58655963|gb|CK044643.1|CK044643
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTANCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58674624|gb|CK063311.1|CK063311
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58597861|gb|CK008389.1|CK008389
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58682006|gb|CK070693.1|CK070693
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58678308|gb|CK066995.1|CK066995
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAAC
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAAC
EST: gi|33797376|gb|CF324550.1|CF324550
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58677281|gb|CK065968.1|CK065968
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58676021|gb|CK064708.1|CK064708
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29657770|gb|CB654045.1|CB654045
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|32948487|gb|BP185059.1|BP185059
EST:     GGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|33794165|gb|CF322973.1|CF322973
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29638848|gb|CB643857.1|CB643857
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58598211|gb|CK008739.1|CK008739
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAG
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAG
EST: gi|15852844|gb|BI805640.1|BI805640
EST:     GAA-TTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58669127|gb|CK057813.1|CK057813
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58658818|gb|CK047498.1|CK047498
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATA
EST: gi|58684594|gb|CK073281.1|CK073281
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|40490189|gb|BX899802.1|BX899802
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|33674893|gb|CF303132.1|CF303132
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58665090|gb|CK053776.1|CK053776
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAAGAAGGCGTAGCATATTACAACAATCTT
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAA-GAAGGCGTAGCATATTACAACAATCTT
EST: gi|58683697|gb|CK072384.1|CK072384
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58669383|gb|CK058069.1|CK058069
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58679788|gb|CK068475.1|CK068475
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58658330|gb|CK047010.1|CK047010
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58680065|gb|CK068752.1|CK068752
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58601658|gb|CK012186.1|CK012186
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58656764|gb|CK045444.1|CK045444
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58658921|gb|CK047601.1|CK047601
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58599133|gb|CK009661.1|CK009661
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29667348|gb|CB663623.1|CB663623
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58677515|gb|CK066202.1|CK066202
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58603614|gb|CK014142.1|CK014142
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29636221|gb|CB641230.1|CB641230
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58685477|gb|CK074164.1|CK074164
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58659974|gb|CK048654.1|CK048654
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29635878|gb|CB640887.1|CB640887
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGATGAGGGACGAGTTAAC
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAAC
EST: gi|29643770|gb|CB648777.1|CB648777
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29672036|gb|CB668311.1|CB668311
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29671916|gb|CB668191.1|CB668191
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29678657|gb|CB674932.1|CB674932
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58677937|gb|CK066624.1|CK066624
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29638180|gb|CB643189.1|CB643189
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58661822|gb|CK050502.1|CK050502
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAAC
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAAC
EST: gi|58679305|gb|CK067992.1|CK067992
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAA
EST: gi|58612837|gb|CK040549.1|CK040549
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29629596|gb|CB634605.1|CB634605
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|13423190|gb|AU176521.1|AU176521
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58680012|gb|CK068699.1|CK068699
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58670653|gb|CK059339.1|CK059339
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|5004341|gb|AU069490.1|AU069490
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58686123|gb|CK074810.1|CK074810
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58679549|gb|CK068236.1|CK068236
EST:     GGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58685224|gb|CK073911.1|CK073911
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58680064|gb|CK068751.1|CK068751
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58663549|gb|CK052235.1|CK052235
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58684613|gb|CK073300.1|CK073300
EST:     AATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGGATCTTCCCAG                         ATGGTGAGGGACGAGT
genomic: AATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGG-ATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGT
EST: gi|58681752|gb|CK070439.1|CK070439
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|33795224|gb|CF323484.1|CF323484
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|14189009|gb|AU183652.1|AU183652
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTA-CATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58682160|gb|CK070847.1|CK070847
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58601425|gb|CK011953.1|CK011953
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58680369|gb|CK069056.1|CK069056
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58592952|gb|CF991260.1|CF991260
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29667382|gb|CB663657.1|CB663657
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|700314|gb|D46605.1|D46605
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAG-ATNATTACAACAATCTT
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCAT-ATTACAACAATCTT
EST: gi|33795297|gb|CF323520.1|CF323520
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58677218|gb|CK065905.1|CK065905
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29635607|gb|CB640616.1|CB640616
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAAGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58655540|gb|CK044220.1|CK044220
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|14189008|gb|AU183651.1|AU183651
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTA-NATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|8860126|gb|AU097444.1|AU097444
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTA-CATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58589976|gb|CF988284.1|CF988284
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|58660539|gb|CK049219.1|CK049219
EST:     GCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|33793788|gb|CF322778.1|CF322778
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|14189007|gb|AU183650.1|AU183650
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTA-CATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|29635223|gb|CB640232.1|CB640232
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAAC
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAAC
EST: gi|58655284|gb|CK043964.1|CK043964
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
EST: gi|33675008|gb|CF303247.1|CF303247
EST:     GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG                         ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA
genomic: GAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgag ... gtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG
      ttttaat  putative branch site (score: 3)
     tttttaatgacaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacattgagtctgactcagattgtagcatgttgccctgataccctgcatcattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctagATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG