1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaaactgatagcattatcaataagatgagtagtggttttactggcaagctaatgatatccttgctggtttgtaatcataccatttgttttaattttcagGTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCATCTTTTGATATGGTTGCTGGGTCTGGAGCTGCCAAGCCTTATACTGCAG
species | Oryza sativa |
transcript | LOC_Os03g47740.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAG GTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCAEST: gi|58609517|gb|CK037550.1|CK037550
genomic: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAGgtgtgtgaat ... taattttcagGTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCA
EST: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAG GTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCGEST: gi|29682413|gb|CB678688.1|CB678688
genomic: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAGgtgtgtgaat ... taattttcagGTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCA
EST: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAG GTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCAEST: gi|11442900|gb|BF430799.1|BF430799
genomic: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAGgtgtgtgaat ... taattttcagGTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCA
EST: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAG GTGGACCGAAAGTACAAACACTATTATCATEST: gi|5667196|gb|AU077456.1|AU077456
genomic: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAGgtgtgtgaat ... taattttcagGTGGACCGAAAGTACAAACACTATTATCAT
EST: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAG GTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCA
genomic: AACAAGAGCTCCAGAATAAGATGGCAAAACTTATGGCCATGTTGGATGAGgtgtgtgaat ... taattttcagGTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCA
caagctaatgatatccttgctggtttgtaatcataccatttgttttaattttcagGTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCATCTTTTGATATGGTTGCTGGGTCTGGAGCTGCCAAGCCTTATACTGCAG
ttttaat putative branch site (score: 3)
tttgtttt CT-rich tract
atttgttttaattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaactgatagcattatcaataagatgagtagtggttttactggcaagctaatgatatccttgctggtttgtaatcataccatttgttttaattttcagGTGGACCGAAAGTACAAACACTATTATCATCAAATGCAAATTGTAGTCTCATCTTTTGATATGGTTGCTGGGTCTGGAGCTGCCAAGCCTTATACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - caataaga
- - - - - - - - - - - - - - - - - - - - - -ggcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatttg