1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agtcactaggaatcattacttagttgattattttataatcttttggtttcatttatttttagcctgcagttcagttatggttcaaattattattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGTCAACTGTTTTGAAGGTTATGGCTGGGCTACTGGCTCCAGACAAG
species | Oryza sativa |
transcript | LOC_Os03g46740.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGEST: gi|58672683|gb|CK061369.1|CK061369
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|218505243|gb|FG948331.1|FG948331
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|58693740|gb|CK082427.1|CK082427
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|88413348|gb|CI581363.1|CI581363
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|29620621|gb|CB625632.1|CB625632
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|88326323|gb|CI660146.1|CI660146
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|58693286|gb|CK081973.1|CK081973
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|226698432|gb|GO497010.1|GO497010
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: GCACAAATCCTTC-GTNAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|88307368|gb|CI642011.1|CI642011
genomic: GCACAAATCCTTCGGT-AACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAAEST: gi|218486282|gb|FG952873.1|FG952873
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAA
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGEST: gi|58592609|gb|CF990917.1|CF990917
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
EST: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAG ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
genomic: TGCACAAATCCTTCGGTAACAAGAAGGTATTGAATGGCATTAGCTTCAAGgtaagttctt ... tattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAG
gtttcatttatttttagcctgcagttcagttatggttcaaattattattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGTCAACTGTTTTGAAGGTTATGGCTGGGCTACTGGCTCCAGACAAG
ttatggttcaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcactaggaatcattacttagttgattattttataatcttttggtttcatttatttttagcctgcagttcagttatggttcaaattattattatgtagATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGTCAACTGTTTTGAAGGTTATGGCTGGGCTACTGGCTCCAGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG