1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggacctagctgtttttcttgctcatatgctatgcacataaaaagactttgttgcaatgttgcctccttcagtaagttctcatttgatttatttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAGGTCAAGCAGCAGTAGATGTTGCTACTAGTTTTACCTGTAAGAACTCGTT
species | Oryza sativa |
transcript | LOC_Os03g46490.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAG GGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAGEST: gi|88556380|gb|CI486701.1|CI486701
genomic: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAGgtaattatca ... atttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAG
EST: ACGATGGCCGCTTCACCACGTTTGCTCTCTGTGGGTTCATCCGTGCTCAG GGAGACNCCGACAGTNCTCTGGATAGGCTGTGGCAGAAGAGGAAGNCTGAGEST: gi|88991865|gb|CI035003.1|CI035003
genomic: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAGgtaattatca ... atttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAG
EST: TGGGTTCATCCGTGCTCAG GGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAGEST: gi|88348854|gb|CI653898.1|CI653898
genomic: TGGGTTCATCCGTGCTCAGgtaattatca ... atttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAG
EST: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAG GGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAGEST: gi|88490968|gb|CI428240.1|CI428240
genomic: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAGgtaattatca ... atttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAG
EST: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAG GGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAGEST: gi|88546853|gb|CI477105.1|CI477105
genomic: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAGgtaattatca ... atttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAG
EST: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAG GGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAGEST: gi|112787237|gb|EE592316.1|EE592316
genomic: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAGgtaattatca ... atttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAG
EST: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAG GGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAG
genomic: ACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAGgtaattatca ... atttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAG
actttgttgcaatgttgcctccttcagtaagttctcatttgatttatttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAGGTCAAGCAGCAGTAGATGTTGCTACTAGTTTTACCTGTAAGAACTCGTT
atttgat putative branch site (score: 18)
tttatttc CT-rich tract
tcatttgatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggacctagctgtttttcttgctcatatgctatgcacataaaaagactttgttgcaatgttgcctccttcagtaagttctcatttgatttatttcgacagGGAGACGCCGACAGTGCTCTGGATAGGCTGTGGCAGAAGAGGAAGGCTGAGGTCAAGCAGCAGTAGATGTTGCTACTAGTTTTACCTGTAAGAACTCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -ctagctg
- - - - - - - -ttcttgc
- - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatttg