1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcccatccttggtgccttggttgttgccttgctgttctgtgcactctaatttaaatatatatagatgacgccttaacatggtctatacatgtctttgcagTGCACTTGTACTGATATTCTACATCTACAAGATATCAAATGGTGGCAATAAGGTTTATGTCCCAGTGAGCGCGGAGTGATACTGGAGGCCAGGGTATTAT
species | Oryza sativa |
transcript | LOC_Os03g38790.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACATCAAAACAAGAAAGGTAATGCCAGCTGGAATAATTGCTGCCGTCAG TGCACTTGTACTGATATTCTACATCTACAAGATATCAAATGGTGGCAATAA
genomic: TACATCAAAACAAGAAAGGTAATGCCAGCTGGAATAATTGCTGCCGTCAGgtattctctc ... gtctttgcagTGCACTTGTACTGATATTCTACATCTACAAGATATCAAATGGTGGCAATAA
ctaatttaaatatatatagatgacgccttaacatggtctatacatgtctttgcagTGCACTTGTACTGATATTCTACATCTACAAGATATCAAATGGTGGCAATAAGGTTTATGTCCCAGTGAGCGCGGAGTGATACTGGAGGCCAGGGTATTAT
ccttaac putative branch site (score: 5)
tgtcttt putative PPT
ttaaatatatatagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccatccttggtgccttggttgttgccttgctgttctgtgcactctaatttaaatatatatagatgacgccttaacatggtctatacatgtctttgcagTGCACTTGTACTGATATTCTACATCTACAAGATATCAAATGGTGGCAATAAGGTTTATGTCCCAGTGAGCGCGGAGTGATACTGGAGGCCAGGGTATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
-cccatcc
- - - - -tggtgcc
- - - - - - - - - - -tgttgcc
- - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - -tgcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggtc