Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctttgagtgtgttcttgccattacatatttagaaaaaaaacacttgcatttattatgtaactttatatttgtgctgatgttgttctcctataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGATCACCGCCGCAAGAACCGCTCACTTGAGGGACTCCAGGCTAATGTCCAGA

Basic information

species Oryza sativa
transcript LOC_Os03g37970.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 3
gctttgagtgtgttcttg--ccattacatatttagaaaaaaaacactt-gcatttatta---tgtaactttatatttgtgctgatgttgttctcctataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGATCACCGCCGCAAGAACCGCTCACTTGAGGGACTCCAGGCTAATGTCCAGA
     |  ||  ||||||     ||  || ||   |       | |||   |  |||||   || ||  | ||| |||      | || || |  | |      ||| ||| || ||||| |||||||  |||||||| || |||||||| || |||||||| ||||||||||| ||  | ||||| || ||| | |||||||| |
-----gtttggattcttgaatttttcaatgttctaagtgttctctctttatagatattaagatgaaagctcatagttgcttgcttctttttgtttttt---tttagGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGACGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88689979|gb|CI734058.1|CI734058
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|218504140|gb|FG945016.1|FG945016
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|33659313|gb|CF281926.1|CF281926
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|13806643|gb|AU181607.1|AU181607
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|87018126|gb|CI275940.1|CI275940
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88689101|gb|CI732677.1|CI732677
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|5667188|gb|AU077448.1|AU077448
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|4878731|gb|AU063030.1|AU063030
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88688401|gb|CI731977.1|CI731977
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|5667187|gb|AU077447.1|AU077447
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|38469727|gb|CF953858.1|CF953858
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88690195|gb|CI734274.1|CI734274
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|86854098|gb|CI252089.1|CI252089
EST:     CAACATGAAGTCGAGGGCTGGGAGAGGCTTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: CAACATGAAGTCGAGGGCTGGGAGAGGC-TTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88690647|gb|CI734726.1|CI734726
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88689939|gb|CI734018.1|CI734018
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|6799283|gb|AU082234.1|AU082234
EST:     NCAACATGAAGTCAAGGGCT-GGAAAGGCTTTACCCTTGAGNAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCCATTGGAATTTCCGTGGA
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAA-CCATTGGAATTTCCGTGGA
EST: gi|88688856|gb|CI732432.1|CI732432
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88688758|gb|CI732334.1|CI732334
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|24468754|gb|CA305703.1|CA305703
EST:     GAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATTCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: GAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88691462|gb|CI733540.1|CI733540
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88688925|gb|CI732501.1|CI732501
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|313080763|gb|HO213560.1|HO213560
EST:     CTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: CTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|22305593|gb|BQ906815.1|BQ906815
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88675804|gb|CI729376.1|CI729376
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCC
EST: gi|33691873|gb|CF320112.1|CF320112
EST:     CTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: CTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58684332|gb|CK073019.1|CK073019
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|117249973|gb|CT863480.1|CT863480
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88691639|gb|CI733717.1|CI733717
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|33661978|gb|CF292945.1|CF292945
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58597198|gb|CK007726.1|CK007726
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58599475|gb|CK010003.1|CK010003
EST:     ATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|218487161|gb|FG950548.1|FG950548
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|38471417|gb|CF955548.1|CF955548
EST:     ACAACATGAAGTCTAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|109974361|gb|DT806867.1|DT806867
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|32948297|gb|BP184869.1|BP184869
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|33659314|gb|CF281927.1|CF281927
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88689102|gb|CI732678.1|CI732678
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58675597|gb|CK064284.1|CK064284
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88313010|gb|CI592294.1|CI592294
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58684746|gb|CK073433.1|CK073433
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88689114|gb|CI732690.1|CI732690
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88690134|gb|CI734213.1|CI734213
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58695028|gb|CK083715.1|CK083715
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|33659164|gb|CF281777.1|CF281777
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58602404|gb|CK012932.1|CK012932
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|163927616|gb|EG713936.1|EG713936
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|218482999|gb|FG956127.1|FG956127
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58603457|gb|CK013985.1|CK013985
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|87013256|gb|CI265354.1|CI265354
EST:     TGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: TGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|88690325|gb|CI734404.1|CI734404
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|55436844|gb|CV731589.1|CV731589
EST:     CTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
genomic: CTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|38469812|gb|CF953943.1|CF953943
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT
EST: gi|58586914|gb|CF985222.1|CF985222
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAC
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 153

CCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgatgttct ... ataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGATCACCGCCGCAAGAACCGCTCACTTGAGGGACTCCAGGCTAATGTCCAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatttattatgtaactttatatttgtgctgatgttgttctcctataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGATCACCGCCGCAAGAACCGCTCACTTGAGGGACTCCAGGCTAATGTCCAGA
                           tgctgat  putative branch site (score: 153)
                                      ttctcctat  putative PPT
     ttattatgtaacttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctttgagtgtgttcttgccattacatatttagaaaaaaaacacttgcatttattatgtaactttatatttgtgctgatgttgttctcctataaacacagGCTGCGGGCATCCCCAAGAAGTATGCTCCAACCATTGGAATTTCCGTGGATCACCGCCGCAAGAACCGCTCACTTGAGGGACTCCAGGCTAATGTCCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - ttcttgc
- - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat