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gttagtgaaatctatttcagatggtttttactacttacagtctttactgatgatggttgaaaattttgaccaagtttttgtttttgttgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCT
species | Oryza sativa |
transcript | LOC_Os03g27990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCT TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCEST: gi|33675549|gb|CF303788.1|CF303788
genomic: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCTgttagtgaaa ... tgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCC
EST: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCT TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCEST: gi|2317456|gb|C22510.1|C22510
genomic: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCTgttagtgaaa ... tgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCC
EST: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCT TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCEST: gi|88349581|gb|CI653860.1|CI653860
genomic: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCTgttagtgaaa ... tgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCC
EST: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCT TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCEST: gi|88571706|gb|CI663079.1|CI663079
genomic: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCTgttagtgaaa ... tgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCC
EST: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCT TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCEST: gi|88329310|gb|CI653224.1|CI653224
genomic: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCTgttagtgaaa ... tgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCC
EST: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCT TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCEST: gi|88298816|gb|CI566013.1|CI566013
genomic: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCTgttagtgaaa ... tgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCC
EST: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCT TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCC
genomic: AAGGGGACCTTGGGGTACAACATGAACGTCATGACTGCACTGGTTGAGCTgttagtgaaa ... tgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCC
tttactgatgatggttgaaaattttgaccaagtttttgtttttgttgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCT
tttttgtttttgtt CT-rich tract
aagtttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgaaatctatttcagatggtttttactacttacagtctttactgatgatggttgaaaattttgaccaagtttttgtttttgttgctttgtagTGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG