1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcagtatttgattatatttggatcgaatatttctttaaaagttccacttatctttggtttaggacaaaactaacttcacctgcttccaacatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGGATCTGACCAGCAAATAAAGGATTTTGCTTGCACAAGATTTAAAGCTGA
species | Oryza sativa |
transcript | LOC_Os03g24380.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAG ATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGEST: gi|8527832|gb|AU092647.1|AU092647
genomic: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAGgttagtctgc ... acatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
EST: ACCAACTTACACGCAGCTGACGGAGCTCTATCAGAAACNCAGGGACAAAG ATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGEST: gi|25807079|gb|CA763033.1|CA763033
genomic: ACCAAC-TACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAGgttagtctgc ... acatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
EST: ACCCAACTTCACGCAGCTGACGGAGCTCTATCAGAAACCCAGGGACAAAG ATTTTGAGATTTTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGEST: gi|3762605|gb|AU029357.1|AU029357
genomic: A-CCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAGgttagtctgc ... acatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
EST: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAG ATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGEST: gi|38565824|gb|CK085277.1|CK085277
genomic: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAGgttagtctgc ... acatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
EST: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAG ATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGEST: gi|8528215|gb|AU093030.1|AU093030
genomic: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAGgttagtctgc ... acatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
EST: CCAACTACACGCNGCTGACGGAGCTCCTATCCAGAAACACAGGGACAAAG ATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGNCAAGAGCCAGEST: gi|29639182|gb|CB644191.1|CB644191
genomic: CCAACTACACGCAGCTGACGGAGCT-CTAT-CAGAAACACAGGGACAAAGgttagtctgc ... acatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
EST: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAG ATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGEST: gi|58587054|gb|CF985362.1|CF985362
genomic: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAGgttagtctgc ... acatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
EST: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAG ATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
genomic: GACCAACTACACGCAGCTGACGGAGCTCTATCAGAAACACAGGGACAAAGgttagtctgc ... acatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAG
ccacttatctttggtttaggacaaaactaacttcacctgcttccaacatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGGATCTGACCAGCAAATAAAGGATTTTGCTTGCACAAGATTTAAAGCTGA
aactaac putative branch site (score: 67)
aaaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcagtatttgattatatttggatcgaatatttctttaaaagttccacttatctttggtttaggacaaaactaacttcacctgcttccaacatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGGATCTGACCAGCAAATAAAGGATTTTGCTTGCACAAGATTTAAAGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
-tgcagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttcc