Sequence
atgc intronic sequence ATGC exonic sequencegtacattttctctaacatctcaagtttcatgtactgataaatggcatttccagcccacttcttgatttgatgtgttctcattcagGATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTCGGAGGTCGTGCAGTGCAGCACAGAGAACTTCAAGGCTATGAATCTGATA
Basic information
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g24220.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G323479_T01 (Zea mays), 3'ss of exon 9
gtacattttctctaacatctcaagtttcatgtactgataaatggcatttc-ca-gcccacttctt-gatttgatg-tgttctcattcagGATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTCGGAGGTCGTGCAGTGCAGCACAGAGAACTTCAAGGCTATGAATCTGATA
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--------------gtaggtcggattctctatgct-acgattgacatttcacacgcccacttctccaaaccgttgctgctaccacgcagGATGAAGCTGGAACCGCCGCGATCAAGACGGTTGAACTCGACAGCATGCTTGGAGGTCGCGCGGTGCAGCACAGGGAACCACAGTGCTACGAGTCCGACA
upper sequence: LOC_Os03g24220.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G081322_T01 (Zea mays), 3'ss of exon 4
---gtacattttctcta---acatctcaagtttcatgtactg--ataaatggcatttccagcccacttcttgatttgatgtgttctcattcagGATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTCGGAGGTCGTGCAGTGCAGCACAGAGAACTTCAAGGCTATGAATCTGATA
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gtagtaggttttctgtgcctgctcctcagatctcctacgacgctacaaacgacattccgtgcccacctgtcgaaaactgttcttgtcacgcagGATGAAGCTGGAACTGCGGCGATCAAGACAGTTGAGCTTGACAGCATGCTCGGGGGCCGTGCGGTGCAGCACAGGGAGCCACAGTGCTACGAGTCTGATA
upper sequence: LOC_Os03g24220.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 3
----------gtacattttctctaacatctcaagtttcatgtactgataaatggcatttccagcccacttcttgatttgatgtgttctcattcagGATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTCGGAGGTCGTGCAGTGCAGCACAGAGAACTTCAAGGCTATGAATCTGATA
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gtattactacttccttttgttcttat-tcagaaattacacttgtagtaaaataacgtttatgcttgaaattgcaacttctggtcttatcat--agGATGAATCTGGAACAGCAGCTATAAAAACTGTTGAGCTTGATACTGTTCTTGGAGGGCGTGCAGTACAACACAGAGAACTTCAAGGCTACGAGTCTGACA
upper sequence: LOC_Os03g24220.1 (Oryza sativa), 3'ss of exon 4
lower sequence: PP1S299_6V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------------------------------------gtacattttctctaacatctcaagtttcatgtactgataaatggcatttccagccc--acttcttgatttgatgtgttctcattc---agGATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTCGGAGGTCGTGCAGTGCAGCACAGAGAACTTCAAGGCTATGAATCTGATA
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gtactctgatttcttggtcaagtgtgaatttgagcttccagtttttctgatatcttttgggtggttgaatagtcaaagccaacttcactttttctgtcatttacctcaaacctgtagtctactgctctagcgctagttggttaatgcatcacggttctgcccggcagGATGAAGCTGGCACTGCGGCAATTAAAACAGTTGAGCTGGACGCTGCTTTAGGTGGTCGCGCTGTTCAATACAGAGAAACTCAAGAACATGAAACGGATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29674447|gb|CB670722.1|CB670722EST: GCGCCTATCTTTTTGACATCCACTTTTGGATTGGGAAAGATTCTAGTCAA GATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTC
genomic: GCGCCTATCTTTTTGACATCCACTTTTGGATTGGGAAAGATTCTAGTCAAgtacattttc ... tctcattcagGATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtactgataaatggcatttccagcccacttcttgatttgatgtgttctcattcagGATGAAGCTGGGACTGCAGCAATTAAGACAGTTGAACTTGACACCATGCTCGGAGGTCGTGCAGTGCAGCACAGAGAACTTCAAGGCTATGAATCTGATA
ttctcattc CT-rich tract
ataaat TA-rich tract