Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggttcattacatctgatcccatagagaatgtatttttatattttgagcaatatatactctgttctctcggttgaaagggctgaattgaaactgttgtcttgtctttccattgatgcagGAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCT

Basic information

species Oryza sativa
transcript LOC_Os03g22610.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g22610.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G896731_T02 (Zea mays), 3'ss of exon 3
gtctggttcattacatctgatcccatagagaatgtatttttatattttgagcaatatatactctgttctctcggttgaaagggctgaattgaaactgttgtcttgtctttccattgatgcagGAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCT
|| |||  |  |  |      |  | | ||||| |   |    || ||  |  ||| ||  | |  | |||  |   |||||| | ||| |||  |||||||    |   |||||||| |||| ||||| || || || |||||| | ||||| ||||| || || ||||||||||||||||| ||||||
gtttggcgccatttacgcaccctgagaaagaatatcactcctcatattttgtgatacatgtttttgtttcttagcacaaagggttaaat-gaatgtgttgtc----cgcgccattgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAATCTCAGTGGAGAATCT

upper sequence: LOC_Os03g22610.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G12110.1 (Glycine max), 3'ss of exon 3
gtctggttcattacatctgatcccatagagaatgtatttttatattttgagcaatatatactctgttctctcggttgaaagggctgaattgaaactgttgtcttgtctttccattgatgcagGAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCT
     |||  ||   ||||   |  | ||     ||||  | | || ||     | |||  |    |   |  |||| ||    |||||   |     |||   ||| ||    || | ||||  | || |  |  || |||||||| ||||| ||||||||||| || |||||||||||||||||||| 
-----gtt--ttttgtctgcctcatttga-----tattcctgttttctg-----tttatctttcaatgctt--gttgtaatttgtgaatcttaggcactgt--ggtcgtt----tgttacagGTTTTGTTGGTGAAGTTCCTGTTTTCCTTGCAAAGCCTCAAACTTACATGAATCTCAGTGGTGAATCG

upper sequence: LOC_Os03g22610.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA05G28940.1 (Glycine max), 3'ss of exon 3
gtctggttcattacatctgatcccatagagaatgtatttttatattttgagcaatatatactctgttctctcggttgaaagggctgaattgaaactgttgtcttgtctttccattgatgcagGAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCT
                                    ||| | |  |     |  | | |  | || | | ||  ||| ||    ||||||  |   |      ||    |   ||| | ||||  | || |  |  || |||||||| ||||| ||||||||||| || |||||||||||||||||||| 
-----------------------------------gtttgtctgctgctctctgtttctcttttgatgtttc--ttgtaattcatgaattttattaggcaaggtggtggt---ttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGAATCTCAGTGGTGAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctcggttgaaagggctgaattgaaactgttgtcttgtctttccattgatgcagGAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCT
                                            cattgat  putative branch site (score: 4)
                                 tcttgtctttccatt  CT-rich tract
                   aattgaaa  TA-rich tract