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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatactgcatacttttttctcgacgataacatttcctgtaccattcatttcatcttcagtttactattaaatgcattttttactgttgagaattttctgtctgttatttaatatttaattttactgtcataacagGCTGGATGTTCTTGGTCTCCATGAATTTGACAGCGTGAGAAAAAGGATGTCTGTCGTTGTACGATTTCCAGACAACATTGTGAAGGTTCTTGTTAAGGGT

Basic information

species Oryza sativa
transcript LOC_Os03g21680.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g21680.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G398288_T01 (Zea mays), 3'ss of exon 2
gtatatactgcatacttttttctcgacgataacatttcctgtaccat--tcatttcatct-tcagtttactattaaatgcattttttactgttgagaattttctgtctgt-tatttaatatttaattttac--tgtcataa-cagGCTGGATGTTCTTGGTCTCCATGAATTTGACAGCGTGAGAAAAAGGATGTCTGTCGTTGTACGATTTCCAGACAACATTGTGAAGGTTCTTGTTAAGGGT
||| ||||||||  | |    | |   ||   | ||  |    |  |   || | |   | ||||||  | |   ||| ||||||  ||   |    |||||  |  ||| |||||| |    ||| ||||  |||||||| |||| ||||||||||||||||||||||||| || || ||||||||||| ||||||||  ||||| | ||||| ||||||| ||||||||||||||| || |||
gtaaatactgcaaccctgaaaccctctgagttccttgacaaagctgtagccactgctggtatcagtt--ccaacgaattcattttgcacctat----atttttagagtgtatatttacttaccaatcttacattgtcataatcagGTTGGATGTTCTTGGTCTCCATGAATTCGATAGTGTGAGAAAAAGAATGTCTGTTATTGTAAGGTTTCCGGACAACAATGTGAAGGTTCTTGTGAAAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgttgagaattttctgtctgttatttaatatttaattttactgtcataacagGCTGGATGTTCTTGGTCTCCATGAATTTGACAGCGTGAGAAAAAGGATGTCTGTCGTTGTACGATTTCCAGACAACATTGTGAAGGTTCTTGTTAAGGGT
                                atttaat  putative branch site (score: 4)
        agaattttctgtctgt  TA-rich tract