Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaatcatactatgtttctgagtcatcccaatgaattctattataaacacataaattgctcatgaattatcgattttgttgcagCTTTTTGAAGTGGCAATAGCTTGTGATGTTGTTCTATGTTGCCGGGTAGCTCCCCTACAGAAGGCCGGTATTGTCGATCTAATAAAAAAGCGGACAAGTG

Basic information

species Oryza sativa
transcript LOC_Os03g20949.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g20949.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G407825_T01 (Zea mays), 3'ss of exon 3
gtaatcaatcatactatgtttctgagtcatcccaatgaattctattataaacacataaattgctcatgaattatcgattttgttgcagCTTTTTGAAGTGGCAATAGCTTGTGATGTTGTTCTATGTTGCCGGGTAGCTCCCCTACAGAAGGCCGGTATTGTCGATCTAATAAAAAAGCGGACAAGTG
|||  | |||||||||   |  |    ||    | | ||||||| | | | ||         |||||||| | |  | ||| || |||||||||||| | || ||||| || ||||| || ||||| || |||||||||||||| |||||||| |||||||| ||||| || || ||||| |||||||
gtatactatcatactaaaatctta--ccaagtgagtaaattctactgtcagca--------actcatgaaattttcaattt-tttcagCTTTTTGAAATCGCTATAGCCTGCGATGTCGTCCTATGCTGTCGGGTAGCTCCCCTTCAGAAGGCTGGTATTGTTGATCTCATTAAGAAGCGAACAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaattctattataaacacataaattgctcatgaattatcgattttgttgcagCTTTTTGAAGTGGCAATAGCTTGTGATGTTGTTCTATGTTGCCGGGTAGCTCCCCTACAGAAGGCCGGTATTGTCGATCTAATAAAAAAGCGGACAAGTG
                                            ttttgtt  CT-rich tract
     attctattataaacac  TA-rich tract