1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatccagcttctgtgtactgctactctaaagttctcattacactgcatgtgtgatacactgagatgtttgttctaattttgtcctaacaaatctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTGACAGATCTGACAAGCCCATGGACCAAAAG
species | Oryza sativa |
transcript | LOC_Os03g20310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTEST: gi|218492876|gb|FG956101.1|FG956101
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCT
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTEST: gi|88345102|gb|CI628356.1|CI628356
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCT
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGEST: gi|88332679|gb|CI660197.1|CI660197
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAG
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAAEST: gi|66916817|gb|CX103665.1|CX103665
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAA
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTEST: gi|58592490|gb|CF990798.1|CF990798
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCT
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTEST: gi|29658760|gb|CB655035.1|CB655035
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCT
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTEST: gi|5803454|gb|AI978424.1|AI978424
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCT
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTEST: gi|58591209|gb|CF989517.1|CF989517
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCT
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTEST: gi|88449999|gb|CI572130.1|CI572130
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCT
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAEST: gi|88432234|gb|CI565267.1|CI565267
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTA
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTTCATCTGATTGGTCEST: gi|29658674|gb|CB654949.1|CB654949
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATT-CATCTGATCGGTC
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTEST: gi|88299315|gb|CI572267.1|CI572267
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCT
EST: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATG GTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGA
genomic: CGAGGACTGACACATCAACAGTCCTGGATACCGACGATAAGAATCAGATGgtaacttctc ... atctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGA
catgtgtgatacactgagatgtttgttctaattttgtcctaacaaatctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTGACAGATCTGACAAGCCCATGGACCAAAAG
tcctaac putative branch site (score: 1)
tctttgc putative PPT
tttgttctaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatccagcttctgtgtactgctactctaaagttctcattacactgcatgtgtgatacactgagatgtttgttctaattttgtcctaacaaatctttgcagGTAGACGGGCAAAGTGGAGCTATTGTGCCTTCTAATTCATCTGATCGGTCTGACAGATCTGACAAGCCCATGGACCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA