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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT

Basic information

species Oryza sativa
transcript LOC_Os03g18690.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G104373_T01 (Zea mays), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                            |||||     |   |  ||   ||| | |  |  ||||  ||| || | ||||   |||||   || |||||||| ||| ||     ||| |   |   || |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
---------------------------ggtctttcccttcccggctgagatttttatgaaa-aaaatgttgctgaagcttctagtgaaaggattaatatgagttttgctg-----tttctcgccctgttgtagGTATGATGCTCATTCTGGTGGTGAGCGTGAGATTCAGAGAACCATGTTGGAGTTGTTAAATCAGCTGGATGGTTTTGATTCAAGAGGAGATGTTAAAGTT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA10G04920.1 (Glycine max), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaat------agtttatatgagtattgatgaacttttttttt----tctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
             || ||  ||     |   ||   | | ||||| ||     |  |  |  |         || | |   | ||||  |      | | | |      ||| |||| |||     |     | |  ||| |||||||||||||| || |||||||| ||||| ||||| || |||||||| |||||||| || ||| | |||||||||||||| || |||||||| ||||| 
------------gtaattttaacccccaactttagctgtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatgagctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacagGTATGATGCTCACTCAGGTGGAGAACGTGAGATTCAAAGGACCATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTAAAAGTG

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA19G35510.1 (Glycine max), 3'ss of exon 3
----------------------gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtg--tatagtaaaagattggtggaactt--cccatgaaatagt--ttatatgagta-----ttgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                       | ||||      |     | ||      || ||| | |   | |||| |||| |   | | | |  ||   || || ||    |   |  || |||  |   ||||||      ||  |  |  | | || |   | ||  ||||||||||| || || |||||||| |||||||||||||| || |||||||||||||| || ||| | |||||||| |||||||| || ||||||||||| 
gtaagttatcgagtatcagcttctggagtcactgttttaagacattttctatcctct-ttttccggatgtagttttttgttttgggaggaggcagggggtacaggactggtagaagagtgatatcatgagtcaattcttattatatgtctcttatatgctttgcagGTATGATGCCCACTCAGGTGGAGAACGTGAAATTCAGAGGACTATGTTGGAGTTGCTGAACCAGTTAGATGGTTTCGATTCAAGAGGTGATGTTAAAGTG

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA11G27200.1 (Glycine max), 3'ss of exon 3
----------------------gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaag-attggtggaactt--cccatgaaatagt--ttatatgagta-----ttgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                       ||||||      |     | ||      || ||| | |   | |||| |||| | | |  |   || | | | || ||    |   |  || |||  |   ||||||      ||  |  |  | | || |   | ||  ||||||||||| || ||  ||||||| |||||||||||||| || ||| |||||||||| || ||| | |||||||| |||||||| || ||||||||||| 
gtaagttatcaagtatcagcttctagagtcactgttttaagacattttctatcctct-ttttccggatgtagtttttttgttttgggaggagtaggggtacaagactagtagaagagtgatatcatgagtcaattcttattatatgtctcttatatgctttgcagGTATGATGCCCACTCAAGTGGAGAACGTGAAATTCAGAGGACTATGATGGAGTTGCTGAACCAGTTAGATGGTTTCGATTCAAGAGGTGATGTTAAAGTG

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA03G32800.1 (Glycine max), 3'ss of exon 3
-------------------gtagagtagtgcatacttcaa---atgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattg-gtggaacttcccatgaaatagt-ttata---tgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                    |  || |||   |   ||||   ||      |||||| | |  ||| | || |||  |    |    ||     | || |||    ||  | |  | | ||      | | ||  |  |  | | ||||   | ||  ||||||||||| || || |||||||| |||||||||||||| || |||||||||||||| || ||| | ||||||||||||||||| ||||| || ||||||
gtaagttattgaacatcagctttaggagtcactgtgtcaagacattttctatcttcttttttctgatttttttttccgggagggggcaggggatgcgggactggttatagagtgatatcatggatcaattcttagtatatgtctcttttatgcattgcagGTATGATGCCCACTCTGGTGGAGAACGTGAAATTCAGAGGACTATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGACGTAAAAGTT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA13G19280.1 (Glycine max), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattgg--tggaacttcccatgaaat------agtttatatgagtattgatgaacttttttttt----tctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
          | | | || ||     || | |  ||| | ||||| || |  || |  | | | |    ||   || | |   | ||||  |      | | | |      ||| |||| |||  |  |     | |  ||| |||||||||||||| || || ||||| ||||||||||| || |||||| | |||||||| || ||| | ||||||||||||||||| |||||||| ||||| 
----------gta-attttaacctccaactttagtat-tcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTGAAAGTG

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT2G20140.1 (Arabidopsis thaliana), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttc-tatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                        | | | ||   || |  || ||  |  |   |  |||  | ||  ||  ||    | | || || || || | ||     ||   |||  |    |  |  |    | |||||||| ||  | || ||||| || |||||||| || ||||||||||||||  | || || ||||| ||||| ||||||||||| ||||||||||| |||
------------------------gtatgcctaaatacaacataaacatgatccattgataa-acaatgttcttgattttgctcaagagatggtatcta-----atatgtgatataaaatggtggttgaaacagGTATGACGCAAACTCAGGTGGGGAACGTGAAATCCAAAGAACCATGTTGGAACTACTGAACCAGCTTGATGGGTTTGATTCAAGAGGAGATGTTAAGGTT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttata-tgagtat-tgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                                                     ||   |   |  |  ||  |  | ||   |   ||    || ||| ||  ||| |||| |   || || |||      | |||||||| ||||| || || || || ||||| || || ||||| ||||||||  | || || ||||| ||||| ||||||||||| ||||||||||| || 
-----------------------------------------------------gtaagttaaactattttcataaacctgatctataacccattgataatggttatctgatta--cttgttgtttgaaagaacagGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTC

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                                                 ||  ||  ||   | |  | || || ||  ||  ||     |  || | |   | ||  |  | || |    |  |||||  |||||||||||||| || ||||| || |||||||| ||||| |||||||||||  |||| || ||| | || ||||||||||||||||||||||| ||||| 
-------------------------------------------------gtgagtcgatga-acattagtgatgaaaaatcatatttttcaagttcttt---tttttttttaattatcaaatattccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGAACTGCTAAACCAGTTAGACGGTTTTGATTCAAGGGGAGATGTCAAAGTG

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S109_234V6.1 (Physcomitrella patens), 3'ss of exon 2
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                               ||  | | |  | ||     ||  |   |||      | ||    | |   | |      | |||  |   | || |||||  |||  || | |  |||||| || |||||||| || |||||||| || ||||||||| | || |||||||||||| | |||||| ||||||| |||||| |  | || || || ||||| 
------------------------------ttttcagacgtagcattaaagtttcgaccagtctctagtgggccacagtattcgtttcgacgcttaagt--ttgttaatgaaaatttggttcttta-ttatagATACGATGCTCACTCCGGTGGAGAACGAGAAATTCAGCGGACTATGTTGGAGTTGTTGAATCAGTTGGATGGATTTGATGCTCGTGGTGACGTAAAAGTC

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S4_277V6.1 (Physcomitrella patens), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                      | | ||| |  || ||  ||| |  |  ||    |||     |||| || |     ||  |||||   | | | |   | |      | | ||  |  |||     |  || |||||||| ||||| ||||||||||| |||||||| || || |||||||||||||| |||||| |||||||||||||| |  | || |||||||| |||
---------------------gttgaaagccgact-taatatgtacatatttcaaatattt---aagactgtt-----ttgtcatgatcaaatatttgaaattgaaagcggagttggtgcttt---actgcagATATGATGCCCATTCCGGTGGAGAGCGAGAAATTCAAAGGACTATGTTGGAGTTGCTGAATCAGTTGGATGGTTTTGATGCTCGTGGTGATGTTAAGGTT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S12_207V6.1 (Physcomitrella patens), 3'ss of exon 2
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttata-tgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                    |  ||   ||| |   | || |  ||  | | ||  || ||| | | |||         ||   | |  | || |||  |||  ||| |        ||  |   || ||  || |||||||||||||| ||||| ||  | || |||||||| || |||||||||||||| |||||| ||||||| ||||||||  | |||||||| || |||
--------------------agcggcgtgtcgtg-gtttggtttatagt-tctgattacagtcataaattc------tgtctagtaatcttgtctattctgaaaattaaca------ttggtacttcattgcagATATGATGCTCATTCAGGTGGGGAAAGAGAGATTCAGAGGACTATGTTGGAGTTGCTGAATCAGTTGGATGGATTTGATTCTCGTGGAGATGTGAAGGTT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ20767 (Selaginella moellendorffii), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                                                                         |  | |||   |   || |||  |      | | ||              || || | ||||||||||| || || ||||||||||| ||||||||| | |||||| | ||| |||| || ||||| |||||||| ||| |  |||| || || ||||||
-------------------------------------------------------------------------gtgatttc--gttgcatggttgttgcagaaactaattgggaacaac----cttctca-agGTATGATGCACACTCTGGTGGAGAGCGCGAAATTCAGCGGACCATGCTTGAGCTGCTGAACCAGCTCGATGGTTTCGATGCTCGGGGTGACGTGAAAGTT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ32659 (Selaginella moellendorffii), 3'ss of exon 3
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttt----tttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                                                                                    |||  | ||| | |||  | |||  |||  |  ||        |    | |||||||||||| || || ||||||||||| ||||||||| | |||||| | ||| |||| || ||||| |||||||| ||| |  |||| || || ||||||
-----------------------------------------------------------------------------------gtgatttcgtt-acatggttgttgcagaaactaattgggaacaaccttctctagGTATGATGCACACTCTGGTGGAGAGCGCGAAATTCAGCGGACCATGCTTGAGCTGCTGAACCAGCTCGATGGTTTCGATGCTCGGGGTGACGTGAAAGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|300216031|gb|HO088657.1|HO088657
EST:     TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAG                         GTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
genomic: TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
EST: gi|109974616|gb|DT807006.1|DT807006
EST:     TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAG                         GTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
genomic: TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
EST: gi|58680306|gb|CK068993.1|CK068993
EST:     TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAG                         GTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
genomic: TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
EST: gi|29675946|gb|CB672221.1|CB672221
EST:     TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAG                         GTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
genomic: TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
EST: gi|29685470|gb|CB681745.1|CB681745
EST:     TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAG                         GTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
genomic: TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
EST: gi|218489498|gb|FG958296.1|FG958296
EST:     TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAG                         GTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
genomic: TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
EST: gi|218487222|gb|FG954424.1|FG954424
EST:     TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAG                         GTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
genomic: TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
EST: gi|29657654|gb|CB653929.1|CB653929
EST:     TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAG                         GTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA
genomic: TCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 65 (downstream exon)
Score: 84

GTGATGGCCCCAAGCTTGTAAGAGAATTGTTTAGGGTGGCTGATGATCTTTCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagt ... ctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT
                        tattgat  putative branch site (score: 84)
                                  cttttttttttctcct  putative PPT
                        tattgatgaacttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatagGTATGATGCTCATTCGGGTGGAGAGCGTGAAATTCAGAGAACCATGTTGGAGTTGCTTAATCAGCTGGATGGTTTTGATTCAAGGGGAGATGTTAAAGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG