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...attattttatgggagaacttgagtttttcattgttctgatttgttgaatatgtatacattatctctcttaatatttataaggtaaaattttatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATCTGAAGCCAGAAAACTTGCTACTGGATTCAAAGTATAATGTAAAGCTTG
species | Oryza sativa |
transcript | LOC_Os03g17980.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58674399|gb|CK063085.1|CK063085
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|29627233|gb|CB632244.1|CB632244
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCACGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58679972|gb|CK068659.1|CK068659
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58659927|gb|CK048607.1|CK048607
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|29663426|gb|CB659701.1|CB659701
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|117237395|gb|CT861888.1|CT861888
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58670476|gb|CK059162.1|CK059162
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|33678911|gb|CF307150.1|CF307150
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58678394|gb|CK067081.1|CK067081
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58672618|gb|CK061304.1|CK061304
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGACACAGAAACATGGTGGTTCATCGTGATEST: gi|58671476|gb|CK060162.1|CK060162
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|29616519|gb|CB621531.1|CB621531
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|88250467|gb|CI348697.1|CI348697
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|29614995|gb|CB620008.1|CB620008
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|33381730|gb|CF197073.1|CF197073
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58668341|gb|CK057027.1|CK057027
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTEST: gi|58680986|gb|CK069673.1|CK069673
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|29672730|gb|CB669005.1|CB669005
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|218488644|gb|FG955529.1|FG955529
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58598230|gb|CK008758.1|CK008758
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGGCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|33797130|gb|CF324430.1|CF324430
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATTATCTGGGGTTGAATACTGCCACAGAAACATGGGGTGGTTCATCGTEST: gi|58669222|gb|CK057908.1|CK057908
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTAT-ATCTGGGGTTGAATACTGCCACAGAAACATGG--TGGTTCATCGT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGATEST: gi|58658129|gb|CK046809.1|CK046809
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAG ATTATATCTGGGGTAGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
genomic: TTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCCAGCAGgtacttgacc ... tatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGAT
gaatatgtatacattatctctcttaatatttataaggtaaaattttatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATCTGAAGCCAGAAAACTTGCTACTGGATTCAAAGTATAATGTAAAGCTTG
tcttaat putative branch site (score: 3)
attatctctcttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattttatgggagaacttgagtttttcattgttctgatttgttgaatatgtatacattatctctcttaatatttataaggtaaaattttatggaacagATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATCTGAAGCCAGAAAACTTGCTACTGGATTCAAAGTATAATGTAAAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC