1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgctctgcttttggcaaattttgagctgaacttatacctctagtccaatttcagtggccagttgtcaccattttttaaatttgttttgccctaccttgcagGTTAAGCAAACAACCGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAGGTTGGAAGTGATCTTCCAAGCACAACAGCGCCGGTTGGCTTATCTCCACTTG
species | Oryza sativa |
transcript | LOC_Os03g17950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTTGATGAACCCACTTGTCCAAAAGATCAAAACTAGCCATATTCAG GTTAAGCAAACAACCGCTACTGTTGGGEST: gi|58600324|gb|CK010852.1|CK010852
genomic: CTGTTTTGATGAACCCACTTGTCCAAAAGATCAAAACTAGCCATATTCAGgtgctctgct ... taccttgcagGTTAAGCAAACAACCGCTACTGTTGGG
EST: CTGTTTTGATGAACCCACTTGTCCAAAAGATCAAAACTAGCCATATTCAG GTTAAGCAAACAACCGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAGGTTEST: gi|58676834|gb|CK065521.1|CK065521
genomic: CTGTTTTGATGAACCCACTTGTCCAAAAGATCAAAACTAGCCATATTCAGgtgctctgct ... taccttgcagGTTAAGCAAACAACCGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAGGTT
EST: TGTTTTGATGAACCCACTTGTCCAAAAGATCAAAACTAGCCATATTCAG GTTAAACAAACAACCGCTACTGTTGTGGGCTTCAGTTACTGTTAGCCAGGT
genomic: TGTTTTGATGAACCCACTTGTCCAAAAGATCAAAACTAGCCATATTCAGgtgctctgct ... taccttgcagGTTAAGCAAACAACCGCTACTGTTG-GGGCTTCAGTTACTGTTAGCCAGGT
aatttcagtggccagttgtcaccattttttaaatttgttttgccctaccttgcagGTTAAGCAAACAACCGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAGGTTGGAAGTGATCTTCCAAGCACAACAGCGCCGGTTGGCTTATCTCCACTTG
ttttgccctacctt CT-rich tract
accattttttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctctgcttttggcaaattttgagctgaacttatacctctagtccaatttcagtggccagttgtcaccattttttaaatttgttttgccctaccttgcagGTTAAGCAAACAACCGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAGGTTGGAAGTGATCTTCCAAGCACAACAGCGCCGGTTGGCTTATCTCCACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG