1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtagaactcaacaatgttgcattgttgccttgtgtgactgcttggcagatttttagctgagaaagtgcgggcctttgatcatgtgttcttttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG
species | Oryza sativa |
transcript | LOC_Os03g16980.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58677155|gb|CK065842.1|CK065842
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|33658124|gb|CF280738.1|CF280738
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58678023|gb|CK066710.1|CK066710
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TGGTCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|30229035|gb|CB966926.1|CB966926
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58665123|gb|CK053809.1|CK053809
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|163923367|gb|EG711100.1|EG711100
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|25800080|gb|CA756041.1|CA756041
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88763168|gb|CI772724.1|CI772724
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88406887|gb|CI578415.1|CI578415
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|163927504|gb|EG710716.1|EG710716
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|30226568|gb|CB964460.1|CB964460
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88729590|gb|CI751393.1|CI751393
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|313080404|gb|HO213412.1|HO213412
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAATCTGAAGAAGEST: gi|58662662|gb|CK051348.1|CK051348
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|33675428|gb|CF303667.1|CF303667
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: GTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58668375|gb|CK057061.1|CK057061
genomic: GTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58601617|gb|CK012145.1|CK012145
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58682312|gb|CK070999.1|CK070999
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|29668646|gb|CB664921.1|CB664921
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|86888864|gb|CI307922.1|CI307922
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58664972|gb|CK053658.1|CK053658
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88388345|gb|CI627884.1|CI627884
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|428184|gb|D24332.1|D24332
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: GACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAG-NAACNTTTTTCACTGGTTCAAAAGACAACCTGAAGAAEST: gi|88725549|gb|CI748808.1|CI748808
genomic: GACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAAC-TTTTTCACTGGTTCAAAAGACAACCTGAAGAA
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88827428|gb|CI777993.1|CI777993
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88372446|gb|CI610769.1|CI610769
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58654932|gb|CK043612.1|CK043612
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCGTGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|86898701|gb|CI292465.1|CI292465
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|29637729|gb|CB642738.1|CB642738
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58672962|gb|CK061648.1|CK061648
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|30226636|gb|CB964528.1|CB964528
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88370196|gb|CI585201.1|CI585201
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88730834|gb|CI754447.1|CI754447
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58686439|gb|CK075126.1|CK075126
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58659240|gb|CK047920.1|CK047920
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58666035|gb|CK054721.1|CK054721
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58664219|gb|CK052905.1|CK052905
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58661516|gb|CK050196.1|CK050196
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|38476842|gb|CF960975.1|CF960975
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|14192538|gb|AU184749.1|AU184749
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCATGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58664364|gb|CK053050.1|CK053050
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88407211|gb|CI581298.1|CI581298
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88692084|gb|CI735659.1|CI735659
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|33676960|gb|CF305199.1|CF305199
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|163923610|gb|EG715331.1|EG715331
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58659773|gb|CK048453.1|CK048453
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88382988|gb|CI683086.1|CI683086
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58660955|gb|CK049635.1|CK049635
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58672357|gb|CK061043.1|CK061043
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58655602|gb|CK044282.1|CK044282
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|33380802|gb|CF196145.1|CF196145
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: AACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|30228342|gb|CB966233.1|CB966233
genomic: AACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58661053|gb|CK049733.1|CK049733
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAEST: gi|33813747|gb|CF332760.1|CF332760
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGA
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58590704|gb|CF989012.1|CF989012
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88351656|gb|CI617381.1|CI617381
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58595983|gb|CK006511.1|CK006511
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58666725|gb|CK055411.1|CK055411
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88410819|gb|CI578625.1|CI578625
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88294549|gb|CI584675.1|CI584675
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88350787|gb|CI619045.1|CI619045
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58656016|gb|CK044696.1|CK044696
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCGCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|29668686|gb|CB664961.1|CB664961
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|88371205|gb|CI597682.1|CI597682
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|14981678|gb|BI306356.1|BI306356
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
cagatttttagctgagaaagtgcgggcctttgatcatgtgttcttttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG
ctttgat putative branch site (score: 5)
tgttcttttctgttc putative PPT
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaactcaacaatgttgcattgttgccttgtgtgactgcttggcagatttttagctgagaaagtgcgggcctttgatcatgtgttcttttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA