1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attttgaggatattttgtttttaaaatttatccttataacattagaacatgtatataattttgtacgctggggtgataacttttgatatttctcttttagATTGGTTATCCTGAAATTGAAGAAAACAGCAAGCCAAGGCACCGTTTCATGGCATCATATGAACAG
species | Oryza sativa |
transcript | LOC_Os03g15700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAG ATTGGTTATCCTGAAATTGAAGAEST: gi|58676654|gb|CK065341.1|CK065341
genomic: TGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAGgtcagtgttc ... tctcttttagATTGGTTATCCTGAAATTGAAGA
EST: TGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAG ATTGGTTATCCTGAAATTGAAGAAAACAGCAEST: gi|14191724|gb|AU183935.1|AU183935
genomic: TGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAGgtcagtgttc ... tctcttttagATTGGTTATCCTGAAATTGAAGAAAACAGCA
EST: TGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAG ATTGGTTATCCTGAAATTGAAGAAAACAGCAAGCCAAGGCACCG
genomic: TGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAGgtcagtgttc ... tctcttttagATTGGTTATCCTGAAATTGAAGAAAACAGCAAGCCAAGGCACCG
aacatgtatataattttgtacgctggggtgataacttttgatatttctcttttagATTGGTTATCCTGAAATTGAAGAAAACAGCAAGCCAAGGCACCGTTTCATGGCATCATATGAACAG
tatttctctttt CT-rich tract
ataacttttgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgaggatattttgtttttaaaatttatccttataacattagaacatgtatataattttgtacgctggggtgataacttttgatatttctcttttagATTGGTTATCCTGAAATTGAAGAAAACAGCAAGCCAAGGCACCGTTTCATGGCATCATATGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - -catgtat