1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtaagatgctactaagtcccgtacagatgccagcaattcttatgccgtttccttttaggttgttattctcacttgtgtctaaactactttcaatttccagATACTATGGTGAAATTTGCTTGCTTTGAGACAATTGTTGAATTAGTATATAAGCATGCAGTTCCAAAGCCAAAAGATGAATGCAGTAAGCCACTCCAGCT
species | Oryza sativa |
transcript | LOC_Os03g15690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGCTTTATAAAGGACTACTTCCTCTCTGGGTTCGCCAAGTTCCTT ATACTATGGTGAAATTTGCTTGCTTTGAGACAATTGTTGAATTAGTATATAEST: gi|58682611|gb|CK071298.1|CK071298
genomic: TGGGCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTTgtaagtcaaa ... caatttccagATACTATGGTGAAATTTGCTTGCTTTGAGACAATTGTTGAATTAGTATATA
EST: GCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTT ATACTATGGTGAAATTTGCTTGCTTTGAGACAATTGTTGAATTAGTATATA
genomic: GCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTTgtaagtcaaa ... caatttccagATACTATGGTGAAATTTGCTTGCTTTGAGACAATTGTTGAATTAGTATATA
cgtttccttttaggttgttattctcacttgtgtctaaactactttcaatttccagATACTATGGTGAAATTTGCTTGCTTTGAGACAATTGTTGAATTAGTATATAAGCATGCAGTTCCAAAGCCAAAAGATGAATGCAGTAAGCCACTCCAGCT
ctactttc CT-rich tract
tttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgctactaagtcccgtacagatgccagcaattcttatgccgtttccttttaggttgttattctcacttgtgtctaaactactttcaatttccagATACTATGGTGAAATTTGCTTGCTTTGAGACAATTGTTGAATTAGTATATAAGCATGCAGTTCCAAAGCCAAAAGATGAATGCAGTAAGCCACTCCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - tgctact
- - - - - - - - - ccgtaca
- - - - - - - - - - - - - -tgccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactac