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...gcttcattgtatataaacaatatttgcataaactagagaacacctgaatgtctgccattggcatgaagattcactgtattttcaacttttcacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTCCTGAGTTCTCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTA
species | Oryza sativa |
transcript | LOC_Os03g13790.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG GTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTEST: gi|88402222|gb|CI615065.1|CI615065
genomic: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGgtacaccatc ... cacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGT
EST: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG GTCAGACATTATTACTATCGTGTTGTTCGACGCATGAAGAAACTTCTCGEST: gi|58689184|gb|CK077871.1|CK077871
genomic: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGgtacaccatc ... cacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCG
EST: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG GTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTEST: gi|88722844|gb|CI746354.1|CI746354
genomic: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGgtacaccatc ... cacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGT
EST: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG GTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTEST: gi|58666001|gb|CK054687.1|CK054687
genomic: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGgtacaccatc ... cacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGT
EST: ATTTTGAGAAGATTACGCTGCGTGT-CAGAGCAAAAGCAAAGATCAG GTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTEST: gi|29618831|gb|CB623843.1|CB623843
genomic: ATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGgtacaccatc ... cacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGT
EST: TACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG GTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTEST: gi|29617184|gb|CB622196.1|CB622196
genomic: TACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGgtacaccatc ... cacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGT
EST: AGAATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG GTCAGACATTATTACTATCGTCTTGTTCGACGCATAGAAGAAACTTCTCGGEST: gi|88337044|gb|CI628130.1|CI628130
genomic: AGAATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGgtacaccatc ... cacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCAT-GAAGAAACTTCTCGG
EST: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAG GTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGT
genomic: AATTTTGAGAAGATTACGCTGCGTGTCCAGAGCAAAAGCAAAGATCAGgtacaccatc ... cacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGT
gaatgtctgccattggcatgaagattcactgtattttcaacttttcacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTCCTGAGTTCTCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTA
cttttcac CT-rich tract
tattttcaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttcattgtatataaacaatatttgcataaactagagaacacctgaatgtctgccattggcatgaagattcactgtattttcaacttttcacattacagGTCAGACATTATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTCCTGAGTTCTCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT