1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgcaaggtaaacatgtaccctccgaatggactagagaagctaaatttgtcgatgttaacatacaagctctgtactgaaaaccactccctgtgtgttgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCCCTGATCGAGCACACCGACGTCGTCGTCCTCCTGGACAACGAGGCCATCT
species | Oryza sativa |
transcript | LOC_Os03g11970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAG ATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCCEST: gi|29640705|gb|CB645714.1|CB645714
genomic: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAGgtaatcaaga ... tgtgttgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCC
EST: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAG ATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCCEST: gi|44678935|gb|CR292369.1|CR292369
genomic: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAGgtaatcaaga ... tgtgttgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCC
EST: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAG ATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCCEST: gi|29638414|gb|CB643423.1|CB643423
genomic: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAGgtaatcaaga ... tgtgttgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCC
EST: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAG ATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCCEST: gi|4715111|gb|AU056228.1|AU056228
genomic: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAGgtaatcaaga ... tgtgttgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCC
EST: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAG ATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCC
genomic: ATTACGGTAGGAAGTCGAAGCTCGGGTTCACAATATATCCTTCACCACAGgtaatcaaga ... tgtgttgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCC
ttgtcgatgttaacatacaagctctgtactgaaaaccactccctgtgtgttgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCCCTGATCGAGCACACCGACGTCGTCGTCCTCCTGGACAACGAGGCCATCT
tgttaac putative branch site (score: 29)
ctccctgt putative PPT
ttaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaaggtaaacatgtaccctccgaatggactagagaagctaaatttgtcgatgttaacatacaagctctgtactgaaaaccactccctgtgtgttgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCCCTGATCGAGCACACCGACGTCGTCGTCCTCCTGGACAACGAGGCCATCT
tgcaagg
- - - - - -catgtac
- - - - - - - - - - - - - - - - - - -agctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtactg