1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccccttaaaatctggttcgttgttatattattttatttttcgttgctggtggcaataattgactttacaaaccatggggaatgttttgggttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGAGCTCCATGATCTTCTGAGCAAGCCTTCTTTGACTGGGATCCCATTACTA
species | Oryza sativa |
transcript | LOC_Os03g10370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGT GTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGAEST: gi|163920353|gb|EG710600.1|EG710600
genomic: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGTgtaagttcct ... gttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGA
EST: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGT GTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGAEST: gi|117230769|gb|CT854061.1|CT854061
genomic: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGTgtaagttcct ... gttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGA
EST: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGT GTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGAEST: gi|88202578|gb|CI200933.1|CI200933
genomic: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGTgtaagttcct ... gttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGA
EST: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGT GTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGAEST: gi|88962532|gb|CI097684.1|CI097684
genomic: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGTgtaagttcct ... gttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGA
EST: GCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGT GTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGAEST: gi|58680551|gb|CK069238.1|CK069238
genomic: GCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGTgtaagttcct ... gttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGA
EST: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGT GTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGA
genomic: AGATTCCGTAGCATGTGGGAGAGATACTGTCGTGCAGTTTCTGCAATTGTgtaagttcct ... gttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGA
gctggtggcaataattgactttacaaaccatggggaatgttttgggttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGAGCTCCATGATCTTCTGAGCAAGCCTTCTTTGACTGGGATCCCATTACTA
aattgac putative branch site (score: 36)
ttcctgc putative PPT
aataattgacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccccttaaaatctggttcgttgttatattattttatttttcgttgctggtggcaataattgactttacaaaccatggggaatgttttgggttcctgcagGTATGTTGTGGATGCAGCCGATCGAGAGAACATGGCTATTGCCAAAAGCGAGCTCCATGATCTTCTGAGCAAGCCTTCTTTGACTGGGATCCCATTACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - ctggttc
- - - - - - - - - -gttgtta
- - - - - - - - - - - - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg