Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattccttcataggagaaaattacttctattagatttattttgttgctaaccagttctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTCAAAACCACAGACGGCTACATGC

Basic information

species Oryza sativa
transcript LOC_Os03g10340.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g10340.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT4G34670.1 (Arabidopsis thaliana), 3'ss of exon 4
-----gtaattattccttcataggagaaaattacttctattagatttattttgttgctaaccagttctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTCAAAACCACAGACGGCTACATGC
      |||  |   || | |    |  |  || |  ||     |    ||| |        |  |||   |||||| |||   || || ||||| ||||| || ||| | || ||||||||||||||  ||||||| || ||||| ||||| |||||||||||||||||||   
gtaagataaagaccactcctttactggca--tattgatacagagtgcggtttttaatctgtgatctct---gtagGGTATGGATTTCACAACCGACAAGCTAAGGTCATTGGTGAAGAAGTGGCAGACTTTGATTGAAGCCCATGTCGATGTGAAAACCACAGACGGCTACACCT

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT3G04840.1 (Arabidopsis thaliana), 3'ss of exon 4
------------------------------------------gtaattattccttcataggagaaaattacttctattagatttattttgttgctaaccagttctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTCAAAACCACAGACGGCTACATGC
                                           |  | |||  || | |     | ||||    | |     ||   |  ||  |    | |  | || |||||||||   || || |||||||| || || ||| | |||||||||||||||||  |||||||||||||||| ||||| |||||||| ||| | ||||  |
gtaaggatagtttgttgtaaacattgatttacatcagtaattctggtcattggttaaaaaacccagattatggttgtggagcttgactgtttttt--ttaatcatctt-tagGGCATGGACTTCACCACCGATAAACTTAGGTCATTGGTTAAGAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGACAGTTACACTC

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv14s0030g01810.t01 (Vitis vinifera), 3'ss of exon 4
--------------gtaattattccttcataggagaaaattacttctattagatttattttgttgctaaccagttct-------attgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTCAAAACCACAGACGGCTACATGC
                | |||  | ||  |     ||  |||| |  |  |||   |  |||  | |   || || |       |||  |||| |||   ||||| || || ||||| || ||  | ||    |||||||||||| |||||||||||||||||||||| || || |||||   |||||  |
gtgggcatagcatgacagttagcctttttttttttaa--ttacatgcaaaagaggaaaattggggtttctcattttttttaataatttcagGGAATGGACTTTACAACAGACAAGCTGAGGTCTTTGGTGCGCAAGTGGCAGACATTGATTGAGGCTCATGTGGATGTTAAGACAACAGATAACTACACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33664975|gb|CF295942.1|CF295942
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|702558|gb|D48849.1|D48849
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|163920115|gb|EG709873.1|EG709873
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|38481755|gb|CF965830.1|CF965830
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|568501|gb|D39350.1|D39350
EST:     GACTTCGTGCTGAGGATGTTCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGT
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGT
EST: gi|33811313|gb|CF331546.1|CF331546
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33687117|gb|CF315356.1|CF315356
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58672107|gb|CK060793.1|CK060793
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|218488713|gb|FG953590.1|FG953590
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58599886|gb|CK010414.1|CK010414
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|86900549|gb|CI298384.1|CI298384
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33794046|gb|CF322913.1|CF322913
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|2275899|gb|C24876.1|C24876
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33659524|gb|CF282137.1|CF282137
EST:     TACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|218499634|gb|FG959031.1|FG959031
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|86829565|gb|CI286753.1|CI286753
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58599902|gb|CK010430.1|CK010430
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATNAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|88301630|gb|CI597323.1|CI597323
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTA-GAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33693693|gb|CF321932.1|CF321932
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|88311347|gb|CI570421.1|CI570421
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATCAGCTCAGATCACTTGTTAAGAAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAG
EST: gi|38472275|gb|CF956406.1|CF956406
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTCGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58587486|gb|CF985794.1|CF985794
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58681868|gb|CK070555.1|CK070555
EST:     GGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58677042|gb|CK065729.1|CK065729
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58612772|gb|CK040484.1|CK040484
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGCGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|38469895|gb|CF954026.1|CF954026
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33693694|gb|CF321933.1|CF321933
EST:     GAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33805842|gb|CF328800.1|CF328800
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58691942|gb|CK080629.1|CK080629
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|27576218|gb|CA998912.1|CA998912
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|55431597|gb|CV728814.1|CV728814
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33817188|gb|CF334429.1|CF334429
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58599812|gb|CK010340.1|CK010340
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTGGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|27576939|gb|CA999633.1|CA999633
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33661268|gb|CF292235.1|CF292235
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|27554311|gb|CA998211.1|CA998211
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|29627211|gb|CB632222.1|CB632222
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|44679482|gb|CR292916.1|CR292916
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58680509|gb|CK069196.1|CK069196
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58692773|gb|CK081460.1|CK081460
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58596560|gb|CK007088.1|CK007088
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATTAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|88300484|gb|CI587288.1|CI587288
EST:     GAATTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|2280748|gb|C25243.1|C25243
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|88367420|gb|CI566386.1|CI566386
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|33689922|gb|CF318161.1|CF318161
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|29627212|gb|CB632223.1|CB632223
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|58661504|gb|CK050184.1|CK050184
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|163926487|gb|EG709999.1|EG709999
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|163918509|gb|EG711439.1|EG711439
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAG
EST: gi|88394937|gb|CI607664.1|CI607664
EST:     GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGG                         GGAATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGT
genomic: GACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 69 (downstream exon)
Score: 212

CTCCTTAGCTGATCTCCAGAACGATGAGGATCAGGCGTACAGGAAGATCAGACTTCGTGCTGAGGATGTGCAAGGGAAGAACGTGCTCACCAACTTTTGGgtaattattc ... tctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTCAAAACCACAGACGGCTACATGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggagaaaattacttctattagatttattttgttgctaaccagttctattgtagGGCATGTCGTTTACTACCGATAAGCTCAGATCACTTGTTAAGAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTCAAAACCACAGACGGCTACATGC
                                  tgctaac  putative branch site (score: 212)
                                            ttctatt  putative PPT
      aaaattacttctatta  TA-rich tract