1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttggcgaattgccgatacccttggaatacaaatttatcagaaaatataatataatccactgtatatttgttttgtggtctcatatcgtccttgttttcagACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCT
species | Oryza sativa |
transcript | LOC_Os03g09140.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTG ACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACEST: gi|33682508|gb|CF310747.1|CF310747
genomic: AAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGgcaagttaac ... ttgttttcagACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACAC
EST: AAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTG ACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACEST: gi|33688710|gb|CF316949.1|CF316949
genomic: AAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGgcaagttaac ... ttgttttcagACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACAC
EST: AAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTG ACAGGCAGTCCTTTTTGAGT-TATCGAAGTGGATTGAAGAGGTAAATACAC
genomic: AAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGgcaagttaac ... ttgttttcagACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACAC
ataatataatccactgtatatttgttttgtggtctcatatcgtccttgttttcagACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCT
tcgtccttgttttc CT-rich tract
tgtatatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggcgaattgccgatacccttggaatacaaatttatcagaaaatataatataatccactgtatatttgttttgtggtctcatatcgtccttgttttcagACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - -tgccgat
- - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - -cagaaaa