1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtgggcaatgctagaaagtcttataacctgaaatggaggtagtagcaaactagtctttatctatgaaaatgaagcaaaatcttatcacaacatttgcagGGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTCGGTTCTGATGCTGTAGCTTATGCCAAGGAAGTCGAAGAACAAATAAATTATG
species | Oryza sativa |
transcript | LOC_Os03g07570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACAATAGGATTGACGGGTTTGCAGACGTGGAAGTACCCAATCCCTCAG GGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTCGGTEST: gi|117224901|gb|CT845968.1|CT845968
genomic: GAACAATAGGATTGACGGGTTTGCAGACGTGGAAGTACCCAATCCCTCAGgtttgtgttc ... acatttgcagGGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTCGGT
EST: GAACAATAGGATTGACGGGTTTGCAGACGTGGAAGTACCCAATCCCTCAG GGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTTGGGEST: gi|29636944|gb|CB641953.1|CB641953
genomic: GAACAATAGGATTGACGGGTTTGCAGACGTGGAAGTACCCAATCCCTCAGgtttgtgttc ... acatttgcagGGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTCGGT
EST: GAACAATAGGATTGACGGGTTTGCAGACGTGGAAGTACCCAATCCCTCAG GGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTCGGT
genomic: GAACAATAGGATTGACGGGTTTGCAGACGTGGAAGTACCCAATCCCTCAGgtttgtgttc ... acatttgcagGGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTCGGT
gcaaactagtctttatctatgaaaatgaagcaaaatcttatcacaacatttgcagGGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTCGGTTCTGATGCTGTAGCTTATGCCAAGGAAGTCGAAGAACAAATAAATTATG
tttatctatgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgggcaatgctagaaagtcttataacctgaaatggaggtagtagcaaactagtctttatctatgaaaatgaagcaaaatcttatcacaacatttgcagGGCGAAATACATCATGTCATGAACCCTGATCCTTACCGTGGAACTTTCGGTTCTGATGCTGTAGCTTATGCCAAGGAAGTCGAAGAACAAATAAATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -gcaatgc
- - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - agcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaagca