1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtaggaagaataatatgtttacttgctcttttattctggaaaaaagtgttcctggttaattcatggaagtttaactttctgctgtcttcttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCT
species | Oryza sativa |
transcript | LOC_Os03g05280.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGEST: gi|86592468|gb|CI253149.1|CI253149
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGG
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGEST: gi|58592544|gb|CF990852.1|CF990852
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGG
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGEST: gi|33691502|gb|CF319741.1|CF319741
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGG
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGEST: gi|86910401|gb|CI293056.1|CI293056
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGG
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAEST: gi|33693314|gb|CF321553.1|CF321553
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAA
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAGAGAAAAAGTTTCACAAATTTGGCTGATGTATGGGEST: gi|58589049|gb|CF987357.1|CF987357
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGG
EST: AGGGGAATCACAAGTTCTTACTACAGAGTGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGEST: gi|88401815|gb|CI591142.1|CI591142
genomic: AGGGGAATCACAAGTTCTTACTACAGAG-GTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGG
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAGAGAGAAAGEST: gi|88401813|gb|CI591140.1|CI591140
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAG
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTCACAAAGAGAGAAAGTTEST: gi|88451481|gb|CI565534.1|CI565534
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAGTT
EST: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG TGTATGATGTC-CAAAGAGAGAAAGTTTCA-AAATTTGGGTGATG
genomic: TAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGgtaattctat ... cttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATG
aagtgttcctggttaattcatggaagtttaactttctgctgtcttcttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCT
gtttaac putative branch site (score: 29)
ctttctgctgtcttct CT-rich tract
ttaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaggaagaataatatgtttacttgctcttttattctggaaaaaagtgttcctggttaattcatggaagtttaactttctgctgtcttcttctgttagTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -aagaataa
- - - - - - - - - - -tacttgc
- - - - - - - - - - - - - - - - -tattctg
- - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg