1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgttgctctaatctttcatggaatagttgatgttgtgcttcttgatatgcatgatacacagtgttttaattatctaatgatgtcgtcttgcttgcagCTGCTTAATATCAACCCAAATGTACGTAATATGATGGAATCTAACACTCAGTTGAGGGAGATGTTCCAGAACCCAGAATTTGTTCGCCAGTTGACATCTC
species | Oryza sativa |
transcript | LOC_Os03g03920.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCAGAACATTATGTCAAATCCTCAGTCCATGAATCAG CTGCTTAATATCAACCCAAATGTACGTAATATGATGGAATCTAACACTCAGEST: gi|33675503|gb|CF303742.1|CF303742
genomic: ATGCAGAACATTATGTCAAATCCTCAGTCCATGAATCAGgttcgttgct ... ttgcttgcagCTGCTTAATATCAACCCAAATGTACGTAATATGATGGAATCTAACACTCAG
EST: TGATGCAAATGATGCAGAACATTATGTCAAATCCTCAGTCCATGAATCAG CTGCTTAATATCAACEST: gi|58663981|gb|CK052667.1|CK052667
genomic: TGATGCAAATGATGCAGAACATTATGTCAAATCCTCAGTCCATGAATCAGgttcgttgct ... ttgcttgcagCTGCTTAATATCAAC
EST: TGATGCAAATGATGCAGAACATTATGTCAAATCCTCAGTCCATGAATCAG TTTCTTAATATCAACCCAAAEST: gi|13420872|gb|AU174962.1|AU174962
genomic: TGATGCAAATGATGCAGAACATTATGTCAAATCCTCAGTCCATGAATCAGgttcgttgct ... ttgcttgcagCTGCTTAATATCAACCCAAA
EST: TGATGCAAATGATGCAGAACATTATGTCAAATCCTCAGTCCATGAATCAG CTGCTTAATATCAACCCAAATGTACGTAATATGATGGAATCTAACACTCAG
genomic: TGATGCAAATGATGCAGAACATTATGTCAAATCCTCAGTCCATGAATCAGgttcgttgct ... ttgcttgcagCTGCTTAATATCAACCCAAATGTACGTAATATGATGGAATCTAACACTCAG
tgatatgcatgatacacagtgttttaattatctaatgatgtcgtcttgcttgcagCTGCTTAATATCAACCCAAATGTACGTAATATGATGGAATCTAACACTCAGTTGAGGGAGATGTTCCAGAACCCAGAATTTGTTCGCCAGTTGACATCTC
atctaat putative branch site (score: 67)
tcttgctt putative PPT
ttttaattatctaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttgctctaatctttcatggaatagttgatgttgtgcttcttgatatgcatgatacacagtgttttaattatctaatgatgtcgtcttgcttgcagCTGCTTAATATCAACCCAAATGTACGTAATATGATGGAATCTAACACTCAGTTGAGGGAGATGTTCCAGAACCCAGAATTTGTTCGCCAGTTGACATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG