1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatatagttttagcctttccctttttgtgcttgcttcagttacccattcaaattttactttaatgtgacgcatatctggcactggcacttctactgacccaatttgcctttcagGATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
species | Oryza sativa |
transcript | LOC_Os03g03460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAG GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGEST: gi|86493313|gb|CI135946.1|CI135946
genomic: CTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAGgtaatatagt ... tgcctttcagGATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
EST: TACAAACCAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAG GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGEST: gi|33804331|gb|CF328040.1|CF328040
genomic: TACAAA-CAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAGgtaatatagt ... tgcctttcagGATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
EST: CTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAG GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGEST: gi|87031789|gb|CI272490.1|CI272490
genomic: CTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAGgtaatatagt ... tgcctttcagGATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
EST: CTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAG GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGEST: gi|29661381|gb|CB657656.1|CB657656
genomic: CTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAGgtaatatagt ... tgcctttcagGATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
EST: CTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAG GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
genomic: CTACAAACAGGGACCCTGCTGCTCAGTTCCTAGTCACTTTCAAAAACAAGgtaatatagt ... tgcctttcagGATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
ttaatgtgacgcatatctggcactggcacttctactgacccaatttgcctttcagGATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
tactgac putative branch site (score: 52)
tttgcctttc putative PPT
aattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatagttttagcctttccctttttgtgcttgcttcagttacccattcaaattttactttaatgtgacgcatatctggcactggcacttctactgacccaatttgcctttcagGATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG