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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcgtttctttttgttcaatttgattgccaaggttgaatttttgtgatctggggctctgggcagagatgatccaagtgctgacgtgtccgttcgccgcagGGACTCGGGATCACGCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACT

Basic information

species Oryza sativa
transcript LOC_Os03g03370.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03370.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G382534_T01 (Zea mays), 3'ss of exon 3
agcgtttctttttgttcaatttgattgccaaggttgaatttttgtg-atctggggctctgggcagagatgatccaa-gtgctgacgtgtccgttcgccgcagGGACTCGGGATCACGCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACT
           |   ||  | ||    | | | |  | | |||||| |   |      ||| | |   |  ||  | ||||   || | | ||    ||||||| || ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| || || |||||||  |||||||||||||
----------gtgagtctctctgccgacgacgatccactctttgtgcacacgctagcttggccggttcttctctgacgtgcct-cgcggc-gtcgctcgcagGGGCTGGGGATCACGCTCTTCGGGATGGCCTACATGTTCGTGCACGACGGCCTCGTCCACCGCCGTTTCCCCGTCGGCCCCATCGAGAACGTGCCCTACT

upper sequence: LOC_Os03g03370.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv02s0025g00240.t01 (Vitis vinifera), 3'ss of exon 4
-agcgtttctttttgttcaatttgattgccaaggttgaatttttgtgatctggggctctgg-gcagagatgatccaagtgctgacgtgtccgttcgccgcagGGACTCGGGATCACGCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACT
   |||  | |  |||| |    ||     ||| | |      | || | |     | |||        | ||   |||  | |  | |   ||   |||||||||| || || ||  |||| || ||||| |||||||| |||||||||||||| |||||||| || ||||| || || |||||||||||||| || ||  
ttacgtggcgtggtgttgatggagagaagaaagatcgtgggaatctgtttttacattttggcatgtttctaattttagt-tttatttatttattt-tcgcagGGACTAGGAATAACAGTGTTTGGCATGGCCTACATGTTTGTCCACGACGGCCTTGTCCACCGTCGATTCCCTGTCGGACCCATCGCCAACGTCCCTTATC

upper sequence: LOC_Os03g03370.2 (Oryza sativa), 3'ss of exon 3
lower sequence: EDO99380 (Chlamydomonas reinhardtii), 3'ss of exon 4
-----------------------------------agcgtttctttttgttcaatttgattgccaaggttgaatttttgtgatctggggctctgggcagagatgatccaagtgctgacgtgtccgttcgccgcagGGACTCGGGATCACGCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACT
                                    || |  | || | | | ||||     |      ||  |   |   |||     | |    |  ||||         |  | ||||| | |||| ||| ||| || || |||||||||||||| || || ||||||||| |||||||||||||||| |||||||||||||| ||||                        
tcatactacgcgtgctccatctcgggcggggcggtggcatcccattct-tcccatttcccaccactacctgcctacctcccatcccaaacccccaacccagAT--------CGGCGGCGTGTGC-TTCGGCGC-GGGTCTGGGCATCACGCTGTTCGGCATCGCCTACATGTTCTTCCACGACGGCCTGGTGCACCGCCGCTTCCCCGTGG------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctggggctctgggcagagatgatccaagtgctgacgtgtccgttcgccgcagGGACTCGGGATCACGCTGTTCGGGATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACT
                               tgctgac  putative branch site (score: 2)
                                         tccgttc  putative PPT