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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtggggggaacagtttatgtttctctgacttgtttctgcaatttttttcgaaggtgcaaagtaggaatgatgcgtaaccatatggcattgtagGTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAG

Basic information

species Oryza sativa
transcript LOC_Os03g02850.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02850.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G171469_T01 (Zea mays), 3'ss of exon 3
gtttgtgggggga-acagtttatgtttctctgacttgtttctgcaatttttttcgaaggtgcaaagtaggaatgatgcgtaaccatatggcattgtagGTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
|||||||   ||| |||  || | ||||        ||||||| |  |  ||      |   | |   | | | ||| ||| | |||   | || ||| || ||||||| ||||| |||||||| ||||| || || |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
gtttgtgtcaggagacaagttttatttc--------gtttctgtagctggtt------ggaaacaactgtagtaatgtgtatcaatacttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG

upper sequence: LOC_Os03g02850.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G426306_T01 (Zea mays), 3'ss of exon 4
gtttgtggggggaacagtttatgtttctctgacttgtttctgcaatttttttcgaaggtgcaaagtaggaatgatgcgtaaccatatggcattgtagGTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
||||||          ||| ||  | || | ||| || |    ||||| ||  | ||||      ||| |||| |  | | | || ||| |    || || | |||||||||||  | ||| | || ||||||||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||
gtttgtaactaatttggtt-attatactat-actcgtgtgatgaatttgtt--ggaggtctt---tagtaatggtttgaagcaatgtggtacctcagATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAG

upper sequence: LOC_Os03g02850.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA05G26630.2 (Glycine max), 3'ss of exon 3
gtttgtggggg-gaacagtttatgtttctctgacttgtttct-----gcaatttttttcgaaggtg--------caaagtaggaatgatgcgtaaccatatggcattgtagGTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
    || ||   ||   ||||  | || | | |  | ||| |      |||||  ||   ||  |          |   ||    | ||||  | |    ||    ||||| |  | |||||| |  |  ||||  | ||  | ||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || |||
----gtaggaatgatttgtttcagctttttttatatatttttttttaacaattccttcataaattaaggcttattatcttatagctaatgctcagcttcgtgtg--tgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG

upper sequence: LOC_Os03g02850.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G09640.1 (Glycine max), 3'ss of exon 3
gtttgtggggg-gaacagtttatgtttctctgacttgtttctgcaatttttttcgaaggtg-------caaagtaggaa-tgatgcgtaaccatatggcattgtagGTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
    || |    ||   ||||  | || | |   || ||| | |||||  |||  ||  |         ||  |   |  | ||||  | |    ||    || || |  | |||||| |  |  ||||  | ||  | ||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || |||
----gtagaaatgatttgtttcagctttttt--ttttttttttcaattcctttataaattaagttttttaatctcatagctaatgctcagcttcgtgtg--tgcagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttttttcgaaggtgcaaagtaggaatgatgcgtaaccatatggcattgtagGTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
                                 gcgtaac  putative branch site (score: 3)
     ttttt  TA-rich tract