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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcaataagcacactgcccaacactgataaagaagtataatgccattcagattctgtacaatcctctgaaatctaattctgtacatggttcataaacagGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATG

Basic information

species Oryza sativa
transcript LOC_Os03g02690.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02690.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G044247_T01 (Zea mays), 3'ss of exon 4
attca-ataagcacactgcccaacactgataaagaagtataatgccattcagattc-tgtac--aatcctctgaaatctaattctgtacatggttcataaacagGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATG
| |||  |    || ||  ||   |||| |  |||    || |    ||     || ||| |  ||| || ||||||    ||   ||| |    ||| | ||||||||||| |||||| | | ||| || || |||||||| ||||| ||| |||| ||||| ||||| |||||||| |||||||||||||||||| ||
actcatgtccagactctatccgcaactgcttcagattattattattttttcttctcatgttcggaattctttgaaat--ggtttattacgta--ccatgagcagGCAGCGGCGTTTGGTCTGAGCAGCGTCGTCTACGTTCCGAAAATCGAGCTAGAGACAGTGACTGAACTGTCAGCGTTCTGCGAGAAGGCAAGCGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcagattctgtacaatcctctgaaatctaattctgtacatggttcataaacagGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATTCTGCGAGAAGGCAAGCATG
                          atctaat  putative branch site (score: 3)
                        aaatctaatt  TA-rich tract