1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatttcttttcttttacaaaaattcgaacaaagaattatctgcttgagaatgatgcgattgttaaccaaaggcttttacaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAG
species | Oryza sativa |
transcript | LOC_Os03g02590.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGEST: gi|33662420|gb|CF293387.1|CF293387
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGEST: gi|313084054|gb|HO213837.1|HO213837
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGEST: gi|38480632|gb|CF964721.1|CF964721
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGEST: gi|84117673|gb|CD151440.1|CD151440
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGEST: gi|29687966|gb|CB684241.1|CB684241
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: TGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGEST: gi|86829554|gb|CI286745.1|CI286745
genomic: TGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGEST: gi|25798400|gb|CA754361.1|CA754361
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGEST: gi|58585983|gb|CF984291.1|CF984291
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: TCAGCCCTCCTGCGGAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
gaattatctgcttgagaatgatgcgattgttaaccaaaggcttttacaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAG
tgttaac putative branch site (score: 2)
cttttac putative PPT
ttttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcttttcttttacaaaaattcgaacaaagaattatctgcttgagaatgatgcgattgttaaccaaaggcttttacaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC