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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcttttcttttacaaaaattcgaacaaagaattatctgcttgagaatgatgcgattgttaaccaaaggcttttacaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAG

Basic information

species Oryza sativa
transcript LOC_Os03g02590.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02590.4 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G029824_T03 (Zea mays), 3'ss of exon 2
------gtatttcttttcttt-tacaaaaattcg---aacaaagaattatct--gcttgagaatgatgcgatt--------gttaaccaaagg------cttttacaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAG
        | ||||   ||    |||  |    |   | |||  |||   |   | ||  |||| |   | ||         ||||||   ||      ||| ||| ||||||||||||||| |||||||| ||||| ||||||||| |||| || ||||| ||| | ||| |||| |||||   ||||
gtaaatcgacttctcccctccacacagtacactgttcatcaagaaatcccccccgtttaggaatcacagggttcgaaacgaattaacctgcgggttcttcttctacgattgcagTCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTTGGATCAGTTTGTGTGGCTCGGACGAACGGGGATCGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88676888|gb|CI731001.1|CI731001
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88905689|gb|CI712988.1|CI712988
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTG
EST: gi|88413042|gb|CI578893.1|CI578893
EST:     TCAGCCCTACTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|218482457|gb|FG952466.1|FG952466
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTAGACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88672349|gb|CI726465.1|CI726465
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCG
EST: gi|88669283|gb|CI719421.1|CI719421
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTG
EST: gi|88389461|gb|CI600630.1|CI600630
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACT
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACT
EST: gi|218487592|gb|FG945521.1|FG945521
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88666530|gb|CI718666.1|CI718666
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGC
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGC
EST: gi|25798400|gb|CA754361.1|CA754361
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88421294|gb|CI569139.1|CI569139
EST:     CAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCCTTGGGAAG                         TGCAAAAATGCGCTGGTCTCGACTTTCTTGTTCCTGGACCAATTTGTATG
genomic: CAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGC-TTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATG
EST: gi|33799872|gb|CF325803.1|CF325803
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88675736|gb|CI729849.1|CI729849
EST:     CAGCCCTCCTGCTAAGGGGGACTCCTCTTACACTGGTCT-GCTTGGGAAG                         TC-AAAAATGCGCTGCTCTC
genomic: CAGCCCTCCTGCTAAGGGG-ACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTC
EST: gi|313084054|gb|HO213837.1|HO213837
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|218488960|gb|FG946367.1|FG946367
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCG
EST: gi|58589271|gb|CF987579.1|CF987579
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|86829554|gb|CI286745.1|CI286745
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|38480632|gb|CF964721.1|CF964721
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88670155|gb|CI724271.1|CI724271
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88674176|gb|CI728289.1|CI728289
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGAATTTCTTGTTCCTGGACCAA
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAA
EST: gi|84117673|gb|CD151440.1|CD151440
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88904917|gb|CI712216.1|CI712216
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTT
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTT
EST: gi|88593535|gb|CI713489.1|CI713489
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCT
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCT
EST: gi|29687966|gb|CB684241.1|CB684241
EST:     TGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|33662420|gb|CF293387.1|CF293387
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88673268|gb|CI726043.1|CI726043
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|29687965|gb|CB684240.1|CB684240
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88441036|gb|CI693618.1|CI693618
EST:     CAGCCCTCCTGCCTAAGGGGACTCCTCTTACACCGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGT
genomic: CAGCCCTCCTGC-TAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGT
EST: gi|88675934|gb|CI730047.1|CI730047
EST:     TNAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCT
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCT
EST: gi|88669906|gb|CI724022.1|CI724022
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCA
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCA
EST: gi|58611378|gb|CK039090.1|CK039090
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|88984133|gb|CI723689.1|CI723689
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCT
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCT
EST: gi|88972526|gb|CI717266.1|CI717266
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGC
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGC
EST: gi|88669463|gb|CI723381.1|CI723381
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATT
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATT
EST: gi|218482011|gb|FG963443.1|FG963443
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|38469451|gb|CF953582.1|CF953582
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|87005527|gb|CI287351.1|CI287351
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTT
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTT
EST: gi|88676362|gb|CI730475.1|CI730475
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTC
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTC
EST: gi|8955721|gb|BE229527.1|BE229527
EST:     CAGCCCTCCTGCTAAGGGGACTBCTCTTACACTGGTYTGTGTTTGGGAAG                         TCCAAAAATGCGBTGCTCTCGA
genomic: CAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCT-TGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGA
EST: gi|88670255|gb|CI724371.1|CI724371
EST:     TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
EST: gi|58585983|gb|CF984291.1|CF984291
EST:     TCAGCCCTCCTGCGGAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG                         TCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG
genomic: TCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 123

TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttcttt ... acaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattatctgcttgagaatgatgcgattgttaaccaaaggcttttacaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAG
                           tgttaac  putative branch site (score: 123)
                                        cttttac  putative PPT
                                         ttttacaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttcttttcttttacaaaaattcgaacaaagaattatctgcttgagaatgatgcgattgttaaccaaaggcttttacaattgcagTCCAAAAATGCGCTGCTCTCGACTTTCTTGTTCCTGGACCAATTTGTATGGTTGGGAAGAACAGGGATATACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC