1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccttgttgattatattatgtaaccatacttcctatatgctatgttaaattagtactccatagacttcataccaatgagttttaccatgacatgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT
species | Oryza sativa |
transcript | LOC_Os02g57854.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88242157|gb|CI242006.1|CI242006
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88353826|gb|CI634617.1|CI634617
genomic: TTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88334071|gb|CI641122.1|CI641122
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|86523723|gb|CI163929.1|CI163929
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: AGGAAAAAGACAAATTACCTTATTGTTGATAACT AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|112785856|gb|EE591550.1|EE591550
genomic: AGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88363322|gb|CI643180.1|CI643180
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88310002|gb|CI657426.1|CI657426
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88339191|gb|CI633762.1|CI633762
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88216147|gb|CI215996.1|CI215996
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: CAAATTACCTTACTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|55433572|gb|CV729894.1|CV729894
genomic: CAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88979436|gb|CI025938.1|CI025938
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|86910935|gb|CI294835.1|CI294835
genomic: TGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|86529211|gb|CI169417.1|CI169417
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: GAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|3761016|gb|C98270.1|C98270
genomic: GAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTNATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACANCAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88333055|gb|CI640898.1|CI640898
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGEST: gi|88282577|gb|CI403973.1|CI403973
genomic: TGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
EST: TTATTGTTGATAACA AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
genomic: TTATTGTTGATAACAgtaataacct ... catgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGG
taaattagtactccatagacttcataccaatgagttttaccatgacatgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT
agtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttgttgattatattatgtaaccatacttcctatatgctatgttaaattagtactccatagacttcataccaatgagttttaccatgacatgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- cttgttg
- - - - - - - - - - -aaccata
- - - - - - - - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataccaa