1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctggcattgtcagaaaaaaaggccgtcatttagcttcagtttatgactttattaaataactcttagctgccttttacattgctattgtatctttaaacagGTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACTGCG
species | Oryza sativa |
transcript | LOC_Os02g57630.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAG GTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACTGCGGCCAEST: gi|29668373|gb|CB664648.1|CB664648
genomic: GTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAGgttagcttcc ... ctttaaacagGTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACT---G-C-
EST: GTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAG GTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACTGCGGCCAEST: gi|218484923|gb|FG943842.1|FG943842
genomic: GTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAGgttagcttcc ... ctttaaacagGTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACT---G-C-
EST: AGATGCAAGTAAAAGGTG-TCAG GTGGAAGAACTTTACTCTCTTAGATGTGGACTCTATTAGTGAACTGCGGCCEST: gi|29668412|gb|CB664687.1|CB664687
genomic: AGATGCAAGTAAAAGGTGTTCAGgttagcttcc ... ctttaaacagGTGGAAGAACTTTACTCTCTT-GATGTGGACTCTATTAGTGAACT---G-C
EST: GTGTTCTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAG GTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACTGCGGCCAEST: gi|33797877|gb|CF324798.1|CF324798
genomic: GTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAGgttagcttcc ... ctttaaacagGTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACT---G-C-
EST: GTGTTTTCACCGAATTGATCCATTATATGCAAGTAAAAGGTGTTCAG GTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACTGCGGCCA
genomic: GTGTTTTCACCGAATTGATCCAGGAGATGCAAGTAAAAGGTGTTCAGgttagcttcc ... ctttaaacagGTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACT---G-C-
actttattaaataactcttagctgccttttacattgctattgtatctttaaacagGTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACTGCG
aaataac putative branch site (score: 2)
tatcttt putative PPT
attaaataactctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggcattgtcagaaaaaaaggccgtcatttagcttcagtttatgactttattaaataactcttagctgccttttacattgctattgtatctttaaacagGTGGAAGAACTTTACTCTCTTGATGTGGACTCTATTAGTGAACTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-tggcatt
- - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt